JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAN2A2_chr15_90898302_90927579	0/0	c0036	3453	1	1	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0037	3453	1	0	1	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0038	3453	1	1	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2B1_chr19_12641512_12671742	1/0	c0001	3036	207	20	27	127	4	28	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0002	3036	24	1	10	5	4	4	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0003	3036	22	3	8	5	4	2	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0004	3036	18	2	9	2	1	4	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0005	3036	14	14	0	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0006	3036	9	9	0	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0007	3036	8	0	3	0	5	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0008	3036	7	7	0	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0009	3036	6	0	4	2	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0010	3036	6	6	0	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0011	3036	5	0	0	5	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0012	3036	5	4	1	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0013	3036	4	3	1	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0014	3036	4	4	0	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0015	3036	4	4	0	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0016	3036	3	3	0	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0017	3036	3	3	0	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0018	3036	3	3	0	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0019	3036	3	2	1	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0020	3036	2	0	0	2	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0021	3036	2	0	2	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0022	3036	2	0	2	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0023	3036	2	1	1	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0024	3036	2	0	0	0	0	2	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0025	3036	2	0	0	2	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0026	3036	1	0	0	1	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0027	3036	1	0	0	1	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0028	3036	1	0	1	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0029	3036	1	0	1	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0030	3036	1	0	0	0	0	1	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/1	c0031	3036	1	0	0	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0032	3036	1	0	1	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0033	3036	1	1	0	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0034	3036	1	1	0	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0035	3036	1	0	0	1	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0036	3036	1	1	0	0	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0037	3036	1	0	0	1	0	0	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	c0038	3036	1	0	0	0	0	1	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B2_chr4_6570189_6628362	0/0	c0001	3030	107	2	22	72	2	9	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/1	c0002	3030	98	11	22	49	3	12	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	c0003	3030	22	1	0	15	1	5	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	c0004	3030	21	11	2	4	2	2	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	c0005	3030	9	1	7	1	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	c0006	3030	5	1	1	2	1	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	c0007	3030	5	5	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	1/0	c0008	3030	4	2	1	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	c0009	3030	4	4	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362