JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAN2B2_chr4_6570189_6628362	0/0	c0060	3030	1	0	1	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	c0061	3030	1	0	0	1	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	c0062	3030	1	0	0	1	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	c0063	3030	1	0	0	1	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	c0064	3030	1	0	0	1	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	c0065	3030	1	0	1	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	c0066	3030	1	0	1	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	c0067	3030	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	c0068	3030	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	c0069	3030	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	c0070	3030	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	c0071	3030	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2C1_chr15_75350792_75373607	1/0	c0001	3123	229	70	45	90	6	17	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/1	c0002	3123	96	3	20	55	7	10	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	c0003	3123	20	0	1	17	0	2	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	c0004	3123	15	0	6	9	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	c0005	3123	3	2	1	0	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	c0006	3123	2	2	0	0	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	c0007	3123	2	0	0	1	1	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	c0008	3123	2	2	0	0	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	c0009	3123	1	0	0	1	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	c0010	3123	1	1	0	0	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	c0011	3123	1	0	0	1	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	c0012	3123	1	1	0	0	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	c0013	3123	1	0	0	1	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	c0014	3123	1	0	0	1	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	c0015	3123	1	0	0	0	0	1	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	c0016	3123	1	1	0	0	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	c0017	3123	1	0	0	0	1	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	c0018	3123	1	0	0	1	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	c0019	3123	1	0	0	1	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	c0020	3123	1	0	0	0	1	0	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	c0021	3123	1	0	1	0	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MANBAL_chr20_37284655_37322260	1/1	c0001	258	270	78	48	94	16	32	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	c0002	258	2	0	0	2	0	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBA_chr4_102625770_102765968	0/0	c0001	2640	124	27	34	45	4	14	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/1	c0002	2640	72	5	18	29	5	14	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	1/0	c0003	2640	18	4	2	8	1	2	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	c0004	2640	17	15	1	0	1	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	c0005	2640	13	12	1	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	c0006	2640	13	0	3	8	1	1	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	c0007	2640	6	6	0	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	c0008	2640	5	5	0	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	c0009	2640	3	3	0	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	c0010	2640	2	2	0	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	c0011	2640	1	1	0	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	c0012	2640	1	0	0	1	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	c0013	2640	1	0	0	0	0	1	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	c0014	2640	1	1	0	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	c0015	2640	1	0	0	1	0	0	copy fasta	MANBA	chr4	102625770	102765968