JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAOA_chrX_43651299_43751817	0/1	c0002	1584	108	24	14	56	6	7	copy fasta	MAOA	chrX	43651299	43751817
MAOA_chrX_43651299_43751817	0/0	c0003	1584	29	22	7	0	0	0	copy fasta	MAOA	chrX	43651299	43751817
MAOA_chrX_43651299_43751817	0/0	c0004	1584	8	8	0	0	0	0	copy fasta	MAOA	chrX	43651299	43751817
MAOA_chrX_43651299_43751817	0/0	c0005	1584	3	0	2	1	0	0	copy fasta	MAOA	chrX	43651299	43751817
MAOA_chrX_43651299_43751817	0/0	c0006	1584	1	1	0	0	0	0	copy fasta	MAOA	chrX	43651299	43751817
MAOA_chrX_43651299_43751817	0/0	c0007	1584	1	1	0	0	0	0	copy fasta	MAOA	chrX	43651299	43751817
MAOB_chrX_43761610_43887450	1/1	c0001	1563	173	32	39	71	9	20	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	c0002	1563	42	0	6	27	0	9	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	c0003	1563	9	7	2	0	0	0	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	c0004	1563	4	4	0	0	0	0	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	c0005	1563	3	1	2	0	0	0	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	c0006	1566	1	0	0	1	0	0	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	c0007	1563	1	0	0	1	0	0	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	c0008	1564	1	0	0	0	0	1	copy fasta	MAOB	chrX	43761610	43887450
MAP10_chr1_232800416_232814929	1/1	c0001	2718	253	41	61	101	12	36	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0002	2718	84	16	13	49	2	4	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0003	2718	20	1	3	15	0	1	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0004	2718	12	12	0	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0005	2718	10	10	0	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0006	2718	10	0	0	7	1	2	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0007	2718	10	1	1	3	2	3	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0008	2718	9	0	0	8	0	1	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0009	2718	7	5	2	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0010	2718	7	6	1	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0011	2718	6	0	0	6	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0012	2718	2	1	1	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0013	2718	2	0	0	2	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0014	2718	2	2	0	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0015	2718	1	0	0	1	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0016	2718	1	0	0	1	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0017	2718	1	0	0	0	0	1	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0018	2718	1	0	0	1	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0019	2718	1	0	0	1	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0020	2718	1	0	0	1	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0021	2718	1	0	0	1	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0022	2718	1	0	0	1	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0023	2718	1	1	0	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0024	2718	1	0	0	1	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0025	2718	1	0	0	1	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	c0026	2718	1	0	0	0	1	0	copy fasta	MAP10	chr1	232800416	232814929
MAP1A_chr15_43512608_43536611	1/1	c0001	8412	132	2	26	73	9	20	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0002	8412	114	41	9	58	0	6	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0003	8412	19	3	5	0	4	7	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0004	8409	17	0	1	16	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0005	8412	7	6	1	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0006	8412	5	3	1	0	0	1	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0007	8412	5	5	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0008	8412	4	0	4	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0009	8412	4	3	1	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0010	8412	2	2	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611