JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAP1A_chr15_43512608_43536611	0/0	c0011	8412	2	0	1	0	1	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0012	8412	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0013	8412	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0014	8412	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0015	8412	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0016	8412	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0017	8412	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0018	8412	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0019	8412	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0020	8412	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0021	8412	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0022	8412	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0023	8412	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0024	8412	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0025	8412	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0026	8412	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0027	8412	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0028	8412	1	0	0	0	0	1	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0029	8412	1	0	0	0	0	1	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0030	8412	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0031	8412	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0032	8412	1	0	1	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0033	8412	1	0	1	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0034	8412	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0035	8412	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0036	8412	1	0	1	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0037	8412	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0038	8412	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0039	8412	1	0	0	0	0	1	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	c0040	8412	1	0	0	0	0	1	copy fasta	MAP1A	chr15	43512608	43536611
MAP1B_chr5_72102475_72214565	0/1	c0001	7407	122	30	22	48	3	18	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0002	7407	100	10	17	58	5	10	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	1/0	c0003	7407	18	1	14	1	0	1	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0004	7407	18	6	3	4	2	3	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0005	7407	17	16	1	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0006	7407	7	6	1	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0007	7407	5	0	5	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0008	7407	4	0	0	4	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0009	7407	4	1	3	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0010	7407	4	4	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0011	7407	4	3	1	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0012	7407	3	0	0	3	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0013	7407	3	3	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0014	7407	2	0	2	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0015	7407	2	0	0	2	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0016	7407	2	1	1	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0017	7407	2	0	0	2	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0018	7407	2	0	0	2	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0019	7407	2	1	1	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0020	7407	2	1	1	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565