JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKRD27_chr19_32592006_32680180	0/0	c0036	3153	1	1	0	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0037	3153	1	0	0	1	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0038	3153	1	0	0	0	0	1	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0039	3153	1	0	1	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD28_chr3_15662236_15802979	1/0	c0001	3252	166	45	23	75	3	19	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/1	c0002	3252	124	12	30	61	7	13	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	c0003	3252	15	13	2	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	c0004	3252	9	9	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	c0005	3252	6	6	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	c0006	3252	4	0	2	0	0	2	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	c0007	3252	3	0	0	3	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	c0008	3252	2	0	0	2	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	c0009	3252	2	2	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	c0010	3252	2	2	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	c0011	3252	1	0	0	1	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	c0012	3252	1	1	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	c0013	3252	1	1	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	c0014	3252	1	1	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	c0015	3252	1	0	1	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	c0016	3252	1	1	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	c0017	3252	1	1	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD29_chr18_23593926_23667911	1/1	c0001	906	336	78	55	150	12	39	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	c0002	906	8	8	0	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	c0003	906	2	1	1	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	c0004	906	1	1	0	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	c0005	906	1	0	1	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	c0006	906	1	0	0	1	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	c0007	906	1	0	1	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	c0008	906	1	0	0	0	0	1	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	c0009	906	1	0	0	1	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD2_chr10_97567779_97588884	1/0	c0001	1002	233	78	30	103	4	17	copy fasta	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/1	c0002	1002	202	16	52	94	12	27	copy fasta	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	c0003	1002	1	0	0	1	0	0	copy fasta	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	c0004	1002	1	0	0	1	0	0	copy fasta	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	c0005	1002	1	0	0	1	0	0	copy fasta	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	c0006	1002	1	0	0	1	0	0	copy fasta	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	c0007	1002	1	1	0	0	0	0	copy fasta	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	c0008	1002	1	0	0	1	0	0	copy fasta	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	c0009	1002	1	1	0	0	0	0	copy fasta	ANKRD2	chr10	97567779	97588884
ANKRD30A_chr10_37120598_37237567	0/0	c0001	4194	76	10	13	43	1	9	copy fasta	ANKRD30A	chr10	37120598	37237567
ANKRD30A_chr10_37120598_37237567	0/0	c0002	4194	39	21	6	8	2	2	copy fasta	ANKRD30A	chr10	37120598	37237567
ANKRD30A_chr10_37120598_37237567	0/0	c0003	4194	18	0	6	10	2	0	copy fasta	ANKRD30A	chr10	37120598	37237567
ANKRD30A_chr10_37120598_37237567	0/0	c0004	4030	14	0	1	10	0	3	copy fasta	ANKRD30A	chr10	37120598	37237567
ANKRD30A_chr10_37120598_37237567	0/0	c0005	4194	12	10	2	0	0	0	copy fasta	ANKRD30A	chr10	37120598	37237567
ANKRD30A_chr10_37120598_37237567	0/1	c0006	4194	12	5	1	3	0	2	copy fasta	ANKRD30A	chr10	37120598	37237567
ANKRD30A_chr10_37120598_37237567	0/0	c0007	4194	11	1	5	2	2	1	copy fasta	ANKRD30A	chr10	37120598	37237567
ANKRD30A_chr10_37120598_37237567	0/0	c0008	4194	10	8	2	0	0	0	copy fasta	ANKRD30A	chr10	37120598	37237567
ANKRD30A_chr10_37120598_37237567	0/0	c0009	4194	10	5	1	3	1	0	copy fasta	ANKRD30A	chr10	37120598	37237567
ANKRD30A_chr10_37120598_37237567	0/0	c0010	4194	10	0	0	10	0	0	copy fasta	ANKRD30A	chr10	37120598	37237567
ANKRD30A_chr10_37120598_37237567	0/0	c0011	4194	9	1	3	0	1	4	copy fasta	ANKRD30A	chr10	37120598	37237567