JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAP1B_chr5_72102475_72214565	0/0	c0021	7407	1	1	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0022	7407	1	0	0	0	0	1	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0023	7419	1	0	1	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0024	7407	1	0	1	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0025	7407	1	0	0	0	0	1	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0026	7407	1	1	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0027	7407	1	0	0	1	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0028	7407	1	1	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0029	7407	1	1	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0030	7407	1	0	0	1	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0031	7407	1	0	0	1	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0032	7407	1	1	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0033	7407	1	0	0	1	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0034	7407	1	1	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0035	7407	1	1	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0036	7407	1	1	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0037	7407	1	0	0	1	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0038	7407	1	0	0	1	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	c0039	7407	1	1	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1LC3A_chr20_34553718_34565345	1/1	c0001	366	408	90	70	194	12	40	copy fasta	MAP1LC3A	chr20	34553718	34565345
MAP1LC3B2_chr12_116554381_116581606	1/1	c0001	378	420	82	60	214	18	44	copy fasta	MAP1LC3B2	chr12	116554381	116581606
MAP1LC3B2_chr12_116554381_116581606	0/0	c0002	378	12	11	1	0	0	0	copy fasta	MAP1LC3B2	chr12	116554381	116581606
MAP1LC3B2_chr12_116554381_116581606	0/0	c0003	378	8	6	2	0	0	0	copy fasta	MAP1LC3B2	chr12	116554381	116581606
MAP1LC3B2_chr12_116554381_116581606	0/0	c0004	378	2	0	0	2	0	0	copy fasta	MAP1LC3B2	chr12	116554381	116581606
MAP1LC3B2_chr12_116554381_116581606	0/0	c0005	378	1	0	1	0	0	0	copy fasta	MAP1LC3B2	chr12	116554381	116581606
MAP1LC3B2_chr12_116554381_116581606	0/0	c0006	378	1	1	0	0	0	0	copy fasta	MAP1LC3B2	chr12	116554381	116581606
MAP1LC3B2_chr12_116554381_116581606	0/0	c0007	378	1	0	0	1	0	0	copy fasta	MAP1LC3B2	chr12	116554381	116581606
MAP1LC3B2_chr12_116554381_116581606	0/0	c0008	378	1	0	0	1	0	0	copy fasta	MAP1LC3B2	chr12	116554381	116581606
MAP1LC3B_chr16_87387336_87409774	1/1	c0001	378	419	96	84	179	16	42	copy fasta	MAP1LC3B	chr16	87387336	87409774
MAP1LC3B_chr16_87387336_87409774	0/0	c0002	378	1	0	0	1	0	0	copy fasta	MAP1LC3B	chr16	87387336	87409774
MAP1LC3C_chr1_241990490_242004098	1/1	c0001	444	429	80	75	216	17	39	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	c0002	444	13	10	1	0	0	2	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	c0003	444	4	1	0	0	1	2	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	c0004	444	1	0	0	1	0	0	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	c0005	444	1	1	0	0	0	0	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	c0006	444	1	0	0	0	0	1	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	c0007	444	1	0	0	0	0	1	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	c0008	444	1	0	0	0	0	1	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	c0009	444	1	0	0	1	0	0	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1S_chr19_17714480_17739513	1/1	c0001	3180	164	38	40	56	8	20	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0002	3180	32	7	13	1	3	8	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0003	3180	24	0	10	2	3	9	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0004	3180	20	18	2	0	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0005	3180	10	10	0	0	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0006	3181	6	1	2	1	0	2	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0007	3180	5	5	0	0	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0008	3180	4	4	0	0	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0009	3181	3	0	0	1	0	2	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0010	3180	2	0	2	0	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0011	3180	2	0	2	0	0	0	copy fasta	MAP1S	chr19	17714480	17739513