JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAP1S_chr19_17714480_17739513	0/0	c0012	3180	2	0	2	0	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0013	3180	2	2	0	0	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0014	3180	1	0	1	0	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0015	3181	1	0	1	0	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0016	3181	1	1	0	0	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0017	3180	1	1	0	0	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0018	3180	1	0	0	1	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0019	3180	1	0	0	1	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0020	3180	1	0	0	0	0	1	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0021	3180	1	0	0	1	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0022	3180	1	0	1	0	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0023	3180	1	0	0	1	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0024	3180	1	0	0	1	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0025	3180	1	0	0	1	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0026	3180	1	0	0	1	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP1S_chr19_17714480_17739513	0/0	c0027	3180	1	1	0	0	0	0	copy fasta	MAP1S	chr19	17714480	17739513
MAP2K1_chr15_66381912_66496544	1/1	c0001	1182	367	89	72	150	16	38	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K1_chr15_66381912_66496544	0/0	c0002	1182	1	0	0	1	0	0	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K1_chr15_66381912_66496544	0/0	c0003	1182	1	1	0	0	0	0	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K1_chr15_66381912_66496544	0/0	c0004	1182	1	1	0	0	0	0	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K1_chr15_66381912_66496544	0/0	c0005	1182	1	0	0	1	0	0	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K1_chr15_66381912_66496544	0/0	c0006	1182	1	1	0	0	0	0	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K2_chr19_4085321_4129122	1/0	c0001	1203	145	49	30	43	2	20	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K2_chr19_4085321_4129122	0/0	c0002	1203	114	12	30	56	6	10	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K2_chr19_4085321_4129122	0/1	c0003	1203	24	2	6	5	2	8	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K2_chr19_4085321_4129122	0/0	c0004	1203	12	12	0	0	0	0	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K2_chr19_4085321_4129122	0/0	c0005	1203	12	2	3	0	0	7	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K2_chr19_4085321_4129122	0/0	c0006	1203	11	6	1	4	0	0	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K2_chr19_4085321_4129122	0/0	c0007	1203	5	0	4	1	0	0	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K2_chr19_4085321_4129122	0/0	c0008	1203	3	0	0	3	0	0	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K2_chr19_4085321_4129122	0/0	c0009	1203	2	0	0	2	0	0	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K2_chr19_4085321_4129122	0/0	c0010	1203	1	1	0	0	0	0	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K2_chr19_4085321_4129122	0/0	c0011	1203	1	0	0	0	0	1	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K3_chr17_21279711_21320232	1/0	c0001	1044	246	49	46	108	9	33	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/1	c0002	1044	98	24	22	34	1	16	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	c0003	1044	6	6	0	0	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	c0004	1044	6	6	0	0	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	c0005	1044	3	0	0	3	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	c0006	1044	2	2	0	0	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	c0007	1044	2	2	0	0	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	c0008	1044	1	1	0	0	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	c0009	1044	1	0	0	1	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	c0010	1044	1	0	0	0	0	1	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K4_chr17_12015877_12148828	1/1	c0001	1200	317	88	45	138	12	32	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	c0002	1200	2	0	0	2	0	0	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	c0003	1200	2	2	0	0	0	0	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	c0004	1200	1	0	1	0	0	0	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K5_chr15_67537703_67812114	1/1	c0001	1347	267	73	40	115	11	26	copy fasta	MAP2K5	chr15	67537703	67812114
MAP2K5_chr15_67537703_67812114	0/0	c0002	1347	9	7	2	0	0	0	copy fasta	MAP2K5	chr15	67537703	67812114
MAP2K5_chr15_67537703_67812114	0/0	c0003	1347	1	0	0	1	0	0	copy fasta	MAP2K5	chr15	67537703	67812114