JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAP2K5_chr15_67537703_67812114	0/0	c0004	1347	1	0	0	0	1	0	copy fasta	MAP2K5	chr15	67537703	67812114
MAP2K6_chr17_69409697_69558865	1/1	c0001	1005	159	51	27	57	8	14	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	c0002	1005	101	27	17	35	4	18	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K7_chr19_7898877_7919478	1/1	c0001	1260	312	84	60	117	16	33	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	c0002	1260	74	0	16	44	1	13	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	c0003	1305	18	0	0	18	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	c0004	1260	8	8	0	0	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	c0005	1260	4	0	0	4	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	c0006	1260	4	0	2	1	1	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	c0007	1260	3	2	1	0	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	c0008	1260	2	0	0	2	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	c0009	1239	2	0	1	0	0	1	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	c0010	1260	2	2	0	0	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	c0011	1260	1	0	0	0	0	1	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	c0012	1260	1	0	0	1	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	c0013	1260	1	1	0	0	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	c0014	1260	1	1	0	0	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2K7_chr19_7898877_7919478	0/0	c0015	1305	1	0	0	1	0	0	copy fasta	MAP2K7	chr19	7898877	7919478
MAP2_chr2_209419047_209739112	1/1	c0001	5484	68	24	10	21	3	8	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	c0002	5484	34	6	4	22	1	1	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	c0003	5484	9	9	0	0	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	c0004	5484	9	7	1	0	0	1	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	c0005	5484	7	7	0	0	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	c0006	5484	4	4	0	0	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	c0007	5484	3	2	1	0	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	c0008	5484	2	0	0	0	0	2	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	c0009	5484	1	1	0	0	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	c0010	5484	1	1	0	0	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	c0011	5484	1	1	0	0	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	c0012	5484	1	0	1	0	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	c0013	5484	1	1	0	0	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	c0014	5484	1	1	0	0	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	c0015	5484	1	1	0	0	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	c0016	5484	1	0	0	1	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	c0017	5484	1	0	0	1	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	c0018	5484	1	0	1	0	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	c0019	5484	1	0	0	1	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP2_chr2_209419047_209739112	0/0	c0020	5484	1	1	0	0	0	0	copy fasta	MAP2	chr2	209419047	209739112
MAP3K10_chr19_40186426_40220575	0/0	c0001	2865	260	73	40	107	10	30	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	1/1	c0002	2865	105	12	19	59	8	5	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	c0003	2865	10	0	8	0	0	2	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	c0004	2865	5	5	0	0	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	c0005	2865	5	5	0	0	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	c0006	2865	2	0	2	0	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	c0007	2865	1	0	0	1	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	c0008	2865	1	0	0	1	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	c0009	2865	1	0	1	0	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	c0010	2865	1	1	0	0	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	c0011	2865	1	1	0	0	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	c0012	2853	1	1	0	0	0	0	copy fasta	MAP3K10	chr19	40186426	40220575