JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAP3K10_chr19_40186426_40220575	0/0	c0013	2865	1	0	0	0	0	1	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	c0014	2865	1	0	0	1	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	c0015	2865	1	0	0	1	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	c0016	2865	1	0	0	1	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K10_chr19_40186426_40220575	0/0	c0017	2865	1	0	0	1	0	0	copy fasta	MAP3K10	chr19	40186426	40220575
MAP3K11_chr11_65592757_65619221	1/1	c0001	2544	253	75	43	109	9	15	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	c0002	2544	113	12	26	47	9	19	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	c0003	2544	4	4	0	0	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	c0004	2544	3	2	1	0	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	c0005	2544	3	0	0	3	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	c0006	2544	2	2	0	0	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	c0007	2544	2	2	0	0	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	c0008	2544	2	0	0	0	0	2	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	c0009	2544	2	0	0	2	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	c0010	2544	1	0	0	0	0	1	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	c0011	2532	1	0	0	1	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	c0012	2544	1	0	0	1	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	c0013	2544	1	0	0	1	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	c0014	2544	1	1	0	0	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	c0015	2544	1	0	0	0	0	1	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	c0016	2544	1	0	0	1	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K11_chr11_65592757_65619221	0/0	c0017	2544	1	0	0	1	0	0	copy fasta	MAP3K11	chr11	65592757	65619221
MAP3K12_chr12_53474669_53504458	1/1	c0001	2679	319	73	67	120	14	43	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	c0002	2679	2	2	0	0	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	c0003	2679	2	2	0	0	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	c0004	2679	1	0	0	0	0	1	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	c0005	2679	1	0	1	0	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	c0006	2679	1	0	0	1	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	c0007	2679	1	1	0	0	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K12_chr12_53474669_53504458	0/0	c0008	2679	1	0	0	1	0	0	copy fasta	MAP3K12	chr12	53474669	53504458
MAP3K13_chr3_185358136_185494094	1/0	c0001	2901	195	51	29	91	4	19	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/1	c0002	2901	47	5	9	19	2	11	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	c0003	2901	9	9	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	c0004	2901	5	0	2	3	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	c0005	2898	4	4	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	c0006	2901	3	2	1	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	c0007	2901	3	0	0	3	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	c0008	2901	2	0	2	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	c0009	2901	1	0	1	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	c0010	2901	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	c0011	2901	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	c0012	2901	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	c0013	2901	1	0	0	1	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	c0014	2901	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	c0015	2901	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	c0016	2901	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	c0017	2901	1	0	0	1	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K13_chr3_185358136_185494094	0/0	c0018	2901	1	1	0	0	0	0	copy fasta	MAP3K13	chr3	185358136	185494094
MAP3K14_chr17_45258119_45322020	0/1	c0001	2844	242	77	39	95	8	22	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	1/0	c0002	2844	81	10	15	43	6	6	copy fasta	MAP3K14	chr17	45258119	45322020