JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAP3K14_chr17_45258119_45322020	0/0	c0003	2844	3	0	3	0	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	c0004	2844	3	1	0	2	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	c0005	2844	2	0	2	0	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	c0006	2844	1	0	1	0	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	c0007	2844	1	0	0	1	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	c0008	2844	1	1	0	0	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	c0009	2844	1	0	0	1	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K14_chr17_45258119_45322020	0/0	c0010	2844	1	1	0	0	0	0	copy fasta	MAP3K14	chr17	45258119	45322020
MAP3K15_chrX_19355059_19520508	0/1	c0001	3942	83	6	16	44	5	11	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	1/0	c0002	3942	42	27	7	5	0	2	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0003	3942	12	10	2	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0004	3942	3	3	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0005	3942	2	2	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0006	3942	2	2	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0007	3941	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0008	3942	1	0	0	1	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0009	3942	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0010	3942	1	0	0	0	0	1	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0011	3942	1	0	0	0	0	1	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0012	3942	1	0	1	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0013	3942	1	0	0	1	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0014	3943	1	0	0	1	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0015	3942	1	0	0	0	0	1	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0016	3942	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0017	3942	1	0	1	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0018	3942	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0019	3942	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0020	3942	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0021	3944	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0022	3942	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0023	3942	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0024	3943	1	0	0	0	0	1	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	c0025	3981	1	0	0	1	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K19_chr2_134959491_135052447	1/0	c0001	3987	114	25	29	45	2	12	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/1	c0002	3987	58	11	9	17	2	18	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0003	3987	47	3	12	28	2	2	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0004	3987	45	4	3	38	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0005	3987	14	14	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0006	3987	6	1	0	5	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0007	3987	5	5	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0008	3987	5	0	0	5	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0009	3987	3	3	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0010	3987	3	0	0	3	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0011	3987	3	0	0	0	0	3	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0012	3987	2	2	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0013	3987	2	2	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0014	3987	2	0	0	2	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0015	3987	2	1	1	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0016	3987	2	0	1	0	0	1	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0017	3987	2	0	0	1	0	1	copy fasta	MAP3K19	chr2	134959491	135052447