JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAP3K19_chr2_134959491_135052447	0/0	c0018	3987	1	0	1	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0019	3987	1	1	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0020	3987	1	1	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0021	3987	1	0	0	1	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0022	3987	1	0	0	1	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0023	3987	1	1	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0024	3987	1	0	1	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0025	3987	1	0	1	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0026	3987	1	0	0	0	0	1	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0027	3987	1	0	0	0	0	1	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0028	3987	1	1	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0029	3987	1	0	0	1	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0030	3987	1	0	0	0	0	1	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0031	3987	1	0	0	1	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0032	3987	1	0	0	1	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0033	3987	1	1	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0034	3987	1	1	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0035	3987	1	1	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	c0036	3987	1	0	0	1	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K1_chr5_56810549_56901152	0/0	c0001	4536	93	26	26	21	6	14	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	c0002	4536	82	15	8	44	2	13	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	1/0	c0003	4539	80	16	10	47	1	5	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	c0004	4539	45	3	8	26	1	7	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	c0005	4536	26	5	0	18	0	3	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	c0006	4536	21	3	3	12	2	1	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	c0007	4539	8	1	7	0	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	c0008	4536	5	5	0	0	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	c0009	4536	4	3	1	0	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	c0010	4536	4	0	3	1	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	c0011	4536	4	3	1	0	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	c0012	4536	3	3	0	0	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/1	c0013	4536	2	0	1	0	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	c0014	4539	1	0	0	0	0	1	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	c0015	4536	1	1	0	0	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	c0016	4536	1	0	0	0	0	1	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	c0017	4536	1	0	0	0	0	1	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	c0018	4539	1	0	0	1	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	c0019	4539	1	0	0	1	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	c0020	4539	1	0	0	1	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K20_chr2_173070846_173273015	1/0	c0001	2403	112	36	23	36	4	12	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0002	2403	60	2	2	51	0	5	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0003	2403	42	1	15	19	1	6	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/1	c0004	2403	26	19	3	0	0	3	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0005	2403	22	2	8	6	0	6	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0006	2403	12	0	4	0	2	6	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0007	2403	12	0	7	3	0	2	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0008	2403	7	0	2	5	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0009	2403	6	5	1	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0010	2403	6	6	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0011	2403	5	0	0	5	0	0	copy fasta	MAP3K20	chr2	173070846	173273015