JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAP3K20_chr2_173070846_173273015	0/0	c0012	2403	4	0	1	1	0	2	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0013	2403	3	3	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0014	2403	3	0	2	1	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0015	2403	2	2	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0016	2403	2	2	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0017	2403	2	0	0	2	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0018	2403	2	2	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0019	2403	1	0	0	1	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0020	2403	1	0	0	0	1	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0021	2403	1	0	0	1	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0022	2403	1	1	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0023	2403	1	0	0	1	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	c0024	2403	1	1	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K21_chr1_233322724_233390148	1/0	c0001	3111	130	47	24	44	2	12	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0002	3111	95	8	12	64	3	8	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0003	3111	67	0	5	46	3	13	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0004	3111	14	3	4	0	4	3	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0005	3111	14	0	4	9	0	1	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0006	3111	10	10	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0007	3111	7	6	1	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0008	3111	7	5	2	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0009	3111	5	5	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0010	3111	2	1	0	0	1	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0011	3111	2	0	0	0	1	1	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/1	c0012	3111	1	0	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0013	3111	1	0	0	0	0	1	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0014	3111	1	0	1	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0015	3111	1	0	0	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0016	3111	1	0	1	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0017	3111	1	1	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0018	3111	1	1	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0019	3111	1	1	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0020	3111	1	1	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0021	3111	1	1	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0022	3111	1	0	0	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0023	3111	1	0	0	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0024	3111	1	1	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0025	3111	1	0	0	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0026	3111	1	0	1	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0027	3111	1	0	1	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0028	3111	1	0	0	0	0	1	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0029	3111	1	0	0	1	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K21_chr1_233322724_233390148	0/0	c0030	3111	1	1	0	0	0	0	copy fasta	MAP3K21	chr1	233322724	233390148
MAP3K2_chr2_127293668_127392975	1/1	c0001	1860	239	49	29	124	4	31	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	c0002	1860	58	19	21	6	2	10	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	c0003	1860	10	9	1	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	c0004	1860	7	6	1	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	c0005	1860	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	c0006	1860	1	0	0	1	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	c0007	1860	1	0	0	0	0	1	copy fasta	MAP3K2	chr2	127293668	127392975