JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAP3K2_chr2_127293668_127392975	0/0	c0008	1860	1	0	0	1	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	c0009	1860	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K2_chr2_127293668_127392975	0/0	c0010	1860	1	1	0	0	0	0	copy fasta	MAP3K2	chr2	127293668	127392975
MAP3K3_chr17_63617417_63701305	1/1	c0001	1881	170	76	39	31	8	14	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	c0002	1881	4	4	0	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	c0003	1881	3	3	0	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	c0004	1881	1	0	0	1	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	c0005	1881	1	1	0	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K3_chr17_63617417_63701305	0/0	c0006	1881	1	0	1	0	0	0	copy fasta	MAP3K3	chr17	63617417	63701305
MAP3K4_chr6_160986769_161122380	0/0	c0001	4824	287	73	51	126	10	27	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	c0002	4827	13	2	1	6	0	4	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	1/0	c0003	4827	10	0	3	4	2	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	c0004	4824	6	6	0	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	c0005	4824	4	0	4	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	c0006	4824	3	0	0	3	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	c0007	4824	2	0	0	2	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	c0008	4815	2	2	0	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	c0009	4824	2	2	0	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	c0010	4827	2	0	1	0	0	1	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	c0011	4827	1	1	0	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	c0012	4827	1	1	0	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	c0013	4824	1	0	0	1	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	c0014	4824	1	0	0	1	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	c0015	4834	1	1	0	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	c0016	4824	1	0	0	1	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	c0017	4824	1	0	1	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	c0018	4824	1	0	1	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/1	c0019	4824	1	0	0	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	c0020	4824	1	0	1	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K4_chr6_160986769_161122380	0/0	c0021	4842	1	0	1	0	0	0	copy fasta	MAP3K4	chr6	160986769	161122380
MAP3K5_chr6_136552046_136797477	0/0	c0001	4125	35	15	5	12	0	3	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	1/1	c0002	4125	23	1	7	9	1	3	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0003	4125	20	7	6	6	1	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0004	4125	16	14	1	0	0	1	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0005	4125	9	1	2	6	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0006	4125	9	4	2	3	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0007	4125	6	1	3	2	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0008	4125	5	2	1	2	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0009	4125	5	3	0	1	0	1	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0010	4125	4	3	1	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0011	4125	3	2	1	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0012	4125	3	2	0	1	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0013	4125	2	0	0	2	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0014	4125	2	1	0	1	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0015	4125	2	2	0	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0016	4125	2	0	0	2	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0017	4128	1	0	0	0	0	1	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0018	4125	1	0	0	1	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0019	4125	1	0	0	1	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0020	4125	1	1	0	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477