JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAP3K5_chr6_136552046_136797477	0/0	c0021	4125	1	1	0	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0022	4125	1	1	0	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0023	4125	1	1	0	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0024	4125	1	0	0	1	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0025	4128	1	0	0	0	0	1	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0026	4125	1	0	0	1	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0027	4125	1	1	0	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0028	4125	1	0	0	1	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0029	4125	1	0	1	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0030	4125	1	1	0	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0031	4125	1	1	0	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K5_chr6_136552046_136797477	0/0	c0032	4125	1	1	0	0	0	0	copy fasta	MAP3K5	chr6	136552046	136797477
MAP3K6_chr1_27350184_27371961	1/0	c0001	3867	148	36	33	58	4	16	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/1	c0002	3867	126	10	14	81	3	17	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0003	3867	47	2	17	16	7	5	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0004	3867	19	16	3	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0005	3867	12	5	3	0	3	1	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0006	3867	7	6	1	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0007	3867	6	5	1	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0008	3867	5	1	4	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0009	3867	4	0	4	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0010	3867	4	0	0	4	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0011	3867	3	3	0	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0012	3867	3	0	0	3	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0013	3867	3	0	0	3	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0014	3867	3	0	0	0	0	3	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0015	3867	2	1	1	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0016	3867	2	2	0	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0017	3867	1	0	0	1	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0018	3867	1	0	0	1	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0019	3867	1	0	0	0	0	1	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0020	3867	1	1	0	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0021	3867	1	0	0	1	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0022	3867	1	1	0	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0023	3867	1	1	0	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0024	3867	1	1	0	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0025	3867	1	0	0	1	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0026	3867	1	0	0	1	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0027	3867	1	1	0	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0028	3867	1	0	1	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0029	3867	1	0	0	0	0	1	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0030	3867	1	0	0	1	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0031	3867	1	0	0	1	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0032	3867	1	0	0	0	1	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0033	3867	1	1	0	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K6_chr1_27350184_27371961	0/0	c0034	3867	1	1	0	0	0	0	copy fasta	MAP3K6	chr1	27350184	27371961
MAP3K7CL_chr21_29125644_29180887	1/1	c0001	429	404	91	72	187	10	42	copy fasta	MAP3K7CL	chr21	29125644	29180887
MAP3K7CL_chr21_29125644_29180887	0/0	c0002	429	1	1	0	0	0	0	copy fasta	MAP3K7CL	chr21	29125644	29180887
MAP3K7CL_chr21_29125644_29180887	0/0	c0003	429	1	0	0	1	0	0	copy fasta	MAP3K7CL	chr21	29125644	29180887
MAP3K7_chr6_90508579_90592072	1/1	c0001	1821	341	82	66	139	12	40	copy fasta	MAP3K7	chr6	90508579	90592072