JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAP3K7_chr6_90508579_90592072	0/0	c0002	1821	2	2	0	0	0	0	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K7_chr6_90508579_90592072	0/0	c0003	1821	1	0	0	1	0	0	copy fasta	MAP3K7	chr6	90508579	90592072
MAP3K8_chr10_30429184_30466833	1/0	c0001	1404	249	75	38	103	6	26	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/1	c0002	1404	110	7	32	55	5	10	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	c0003	1404	8	7	0	0	1	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	c0004	1404	8	0	0	8	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	c0005	1404	2	2	0	0	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	c0006	1404	2	0	0	2	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	c0007	1404	2	2	0	0	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	c0008	1404	1	0	0	1	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	c0009	1404	1	0	1	0	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	c0010	1404	1	1	0	0	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	c0011	1404	1	0	1	0	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K8_chr10_30429184_30466833	0/0	c0012	1404	1	0	0	1	0	0	copy fasta	MAP3K8	chr10	30429184	30466833
MAP3K9_chr14_70717526_70814513	1/1	c0001	3315	262	49	46	134	8	23	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0002	3315	70	11	15	37	1	6	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0003	3315	10	4	3	0	1	2	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0004	3315	5	5	0	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0005	3315	4	4	0	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0006	3315	4	4	0	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0007	3315	2	0	2	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0008	3315	2	0	0	2	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0009	3315	2	0	0	0	2	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0010	3315	1	0	0	0	0	1	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0011	3315	1	0	0	0	1	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0012	3315	1	0	0	0	1	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0013	3315	1	0	0	1	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0014	3315	1	1	0	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0015	3315	1	0	0	1	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0016	3315	1	0	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0017	3315	1	1	0	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0018	3315	1	0	0	1	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0019	3315	1	1	0	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0020	3315	1	0	1	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0021	3315	1	1	0	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP3K9_chr14_70717526_70814513	0/0	c0022	3315	1	1	0	0	0	0	copy fasta	MAP3K9	chr14	70717526	70814513
MAP4K1_chr19_38582641_38622953	1/1	c0001	2466	243	66	53	86	8	28	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	c0002	2466	56	4	4	38	0	10	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	c0003	2466	11	0	1	10	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	c0004	2466	9	5	3	1	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	c0005	2466	4	4	0	0	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	c0006	2466	3	0	0	1	0	2	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	c0007	2466	3	0	3	0	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	c0008	2466	3	0	0	3	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	c0009	2466	3	0	0	3	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	c0010	2466	1	0	0	1	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	c0011	2466	1	0	0	1	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	c0012	2466	1	0	1	0	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	c0013	2466	1	1	0	0	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	c0014	2466	1	0	1	0	0	0	copy fasta	MAP4K1	chr19	38582641	38622953