JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAP4K1_chr19_38582641_38622953	0/0	c0015	2466	1	0	0	0	0	1	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	c0016	2466	1	0	1	0	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	c0017	2466	1	1	0	0	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	c0018	2466	1	1	0	0	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	c0019	2466	1	0	1	0	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	c0020	2466	1	0	0	1	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	c0021	2466	1	0	0	1	0	0	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K1_chr19_38582641_38622953	0/0	c0022	2466	1	0	0	0	0	1	copy fasta	MAP4K1	chr19	38582641	38622953
MAP4K2_chr11_64779918_64808214	1/1	c0001	2463	346	79	55	156	14	40	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	c0002	2463	5	5	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	c0003	2463	3	2	1	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	c0004	2463	2	0	0	2	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	c0005	2463	2	0	0	0	0	2	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	c0006	2463	2	1	1	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	c0007	2463	2	2	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	c0008	2463	1	1	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	c0009	2463	1	1	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	c0010	2463	1	0	1	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	c0011	2463	1	0	0	1	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	c0012	2463	1	0	0	1	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K2_chr11_64779918_64808214	0/0	c0013	2463	1	1	0	0	0	0	copy fasta	MAP4K2	chr11	64779918	64808214
MAP4K3_chr2_39244266_39442285	1/0	c0001	2685	113	54	19	30	1	8	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/1	c0002	2685	90	13	22	32	4	18	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	c0003	2685	20	4	1	10	1	4	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	c0004	2685	2	2	0	0	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	c0005	2685	2	1	1	0	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	c0006	2685	1	0	0	1	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	c0007	2685	1	0	1	0	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	c0008	2685	1	0	0	1	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	c0009	2685	1	1	0	0	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K3_chr2_39244266_39442285	0/0	c0010	2685	1	1	0	0	0	0	copy fasta	MAP4K3	chr2	39244266	39442285
MAP4K4_chr2_101692707_101899690	1/1	c0001	4155	264	78	51	101	7	25	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	c0002	4155	36	10	1	15	3	7	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	c0003	4155	5	4	1	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	c0004	4155	2	0	0	2	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	c0005	4155	1	0	1	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	c0006	4155	1	1	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K4_chr2_101692707_101899690	0/0	c0007	4155	1	1	0	0	0	0	copy fasta	MAP4K4	chr2	101692707	101899690
MAP4K5_chr14_50413521_50537569	1/0	c0001	2541	197	64	41	74	3	14	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	c0002	2541	8	0	5	1	1	1	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	c0003	2541	5	5	0	0	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	c0004	2541	4	0	4	0	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	c0005	2541	4	0	4	0	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	c0006	2541	4	4	0	0	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	c0007	2541	3	3	0	0	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/1	c0008	2541	3	1	0	0	0	1	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	c0009	2541	3	0	0	3	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	c0010	2541	2	2	0	0	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	c0011	2541	1	0	1	0	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	c0012	2541	1	0	1	0	0	0	copy fasta	MAP4K5	chr14	50413521	50537569