JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAP4K5_chr14_50413521_50537569	0/0	c0013	2541	1	0	0	1	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	c0014	2541	1	1	0	0	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	c0015	2541	1	1	0	0	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	c0016	2541	1	1	0	0	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4K5_chr14_50413521_50537569	0/0	c0017	2541	1	0	0	1	0	0	copy fasta	MAP4K5	chr14	50413521	50537569
MAP4_chr3_47845695_48021416	1/0	c0001	6891	91	16	18	41	3	12	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/1	c0002	6891	65	10	14	36	2	2	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0003	6891	13	12	1	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0004	6891	9	4	1	3	0	1	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0005	6891	7	7	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0006	6891	6	0	1	0	0	5	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0007	6891	4	4	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0008	6891	4	4	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0009	6891	3	3	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0010	6891	3	2	1	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0011	6891	2	0	2	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0012	6891	2	0	0	0	0	2	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0013	6891	2	2	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0014	6891	2	0	0	2	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0015	6891	2	2	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0016	6891	1	0	1	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0017	6891	1	0	0	1	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0018	6891	1	0	1	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0019	6891	1	0	0	0	0	1	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0020	6891	1	1	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0021	6891	1	0	0	1	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0022	6891	1	1	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0023	6891	1	0	0	1	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0024	6891	1	0	0	0	1	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0025	6891	1	0	0	1	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0026	6891	1	0	1	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0027	6891	1	0	1	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0028	6891	1	1	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0029	6891	1	0	0	0	0	1	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0030	6891	1	1	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0031	6891	1	1	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP4_chr3_47845695_48021416	0/0	c0032	6891	1	1	0	0	0	0	copy fasta	MAP4	chr3	47845695	48021416
MAP6D1_chr3_183810922_183830577	1/0	c0001	600	234	54	35	108	8	28	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/1	c0002	600	212	28	44	112	10	17	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	c0003	600	6	5	1	0	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	c0004	600	2	1	1	0	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	c0005	600	2	2	0	0	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	c0006	600	2	2	0	0	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	c0007	600	1	0	0	1	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	c0008	600	1	0	0	0	0	1	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	c0009	573	1	0	0	1	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6D1_chr3_183810922_183830577	0/0	c0010	600	1	0	1	0	0	0	copy fasta	MAP6D1	chr3	183810922	183830577
MAP6_chr11_75581918_75674038	0/0	c0001	2442	140	37	8	85	1	9	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	1/0	c0002	2442	87	16	12	43	3	12	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	c0003	2442	76	19	12	32	3	10	copy fasta	MAP6	chr11	75581918	75674038