JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAP6_chr11_75581918_75674038	0/0	c0004	2442	63	7	23	22	3	8	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	c0005	2442	5	0	0	5	0	0	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/1	c0006	2442	4	0	0	2	1	0	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	c0007	2442	2	2	0	0	0	0	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	c0008	2442	2	0	0	2	0	0	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	c0009	2442	1	1	0	0	0	0	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	c0010	2442	1	0	0	1	0	0	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	c0011	2442	1	1	0	0	0	0	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	c0012	2442	1	1	0	0	0	0	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	c0013	2442	1	0	1	0	0	0	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	c0014	2442	1	0	0	0	0	1	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	c0015	2442	1	0	0	1	0	0	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	c0016	2442	1	0	0	0	1	0	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	c0017	2442	1	0	1	0	0	0	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	c0018	2442	1	0	0	1	0	0	copy fasta	MAP6	chr11	75581918	75674038
MAP6_chr11_75581918_75674038	0/0	c0019	2442	1	0	1	0	0	0	copy fasta	MAP6	chr11	75581918	75674038
MAP7D1_chr1_36151160_36185849	0/0	c0001	2523	150	30	19	78	6	17	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	1/1	c0002	2523	71	9	21	16	7	16	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0003	2520	33	0	7	24	1	1	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0004	2523	24	1	0	23	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0005	2523	15	12	3	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0006	2523	12	11	1	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0007	2523	10	0	9	1	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0008	2523	7	0	0	7	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0009	2524	6	0	2	3	0	1	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0010	2523	5	4	1	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0011	2523	5	0	3	1	0	1	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0012	2523	5	0	0	4	0	1	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0013	2523	3	0	2	1	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0014	2523	3	3	0	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0015	2523	3	1	2	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0016	2523	3	3	0	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0017	2523	3	0	0	3	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0018	2523	2	0	2	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0019	2524	2	0	0	2	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0020	2523	1	0	1	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0021	2524	1	0	1	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0022	2523	1	0	0	0	0	1	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0023	2524	1	0	1	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0024	2523	1	0	0	1	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0025	2523	1	0	1	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0026	2524	1	0	0	1	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0027	2524	1	1	0	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0028	2523	1	0	0	1	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0029	2538	1	1	0	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0030	2523	1	1	0	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0031	2523	1	0	0	1	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0032	2523	1	1	0	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0033	2523	1	0	0	1	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D1_chr1_36151160_36185849	0/0	c0034	2523	1	1	0	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849