JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAP7D1_chr1_36151160_36185849	0/0	c0035	2523	1	1	0	0	0	0	copy fasta	MAP7D1	chr1	36151160	36185849
MAP7D2_chrX_20001713_20121907	1/1	c0001	2322	103	1	23	60	4	13	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	c0002	2322	79	51	15	7	3	3	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	c0003	2322	9	6	0	1	0	2	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	c0004	2322	5	4	1	0	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	c0005	2322	3	1	2	0	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	c0006	2322	1	0	0	0	0	1	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	c0007	2321	1	0	0	1	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	c0008	2321	1	0	0	1	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	c0009	2327	1	0	0	1	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	c0010	2322	1	1	0	0	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	c0011	2326	1	0	0	1	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	c0012	2322	1	0	1	0	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	c0013	2322	1	1	0	0	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	c0014	2322	1	0	1	0	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	c0015	2322	1	0	0	1	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D2_chrX_20001713_20121907	0/0	c0016	2322	1	1	0	0	0	0	copy fasta	MAP7D2	chrX	20001713	20121907
MAP7D3_chrX_136211814_136256400	0/1	c0001	2631	135	16	25	75	5	13	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	1/0	c0002	2631	111	28	21	41	6	14	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	c0003	2631	15	14	1	0	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	c0004	2631	2	2	0	0	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	c0005	2631	2	2	0	0	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	c0006	2631	2	0	0	2	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	c0007	2631	1	0	0	0	0	1	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	c0008	2631	1	0	1	0	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	c0009	2631	1	0	1	0	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	c0010	2630	1	0	0	1	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	c0011	2632	1	0	0	1	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	c0012	2631	1	0	0	1	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	c0013	2631	1	1	0	0	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	c0014	2631	1	1	0	0	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7D3_chrX_136211814_136256400	0/0	c0015	2631	1	0	0	1	0	0	copy fasta	MAP7D3	chrX	136211814	136256400
MAP7_chr6_136337734_136555422	0/1	c0001	2250	109	23	22	57	1	5	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	1/0	c0002	2250	102	21	13	60	1	6	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	c0003	2250	15	2	5	8	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	c0004	2247	6	6	0	0	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	c0005	2232	3	0	0	3	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	c0006	2250	3	3	0	0	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	c0007	2250	2	0	0	2	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	c0008	2250	2	2	0	0	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	c0009	2250	1	0	0	1	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	c0010	2250	1	0	1	0	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	c0011	2250	1	1	0	0	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	c0012	2250	1	0	0	1	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	c0013	2250	1	0	1	0	0	0	copy fasta	MAP7	chr6	136337734	136555422
MAP7_chr6_136337734_136555422	0/0	c0014	2250	1	0	0	0	0	1	copy fasta	MAP7	chr6	136337734	136555422
MAP9_chr4_155337658_155381965	0/0	c0001	1944	97	11	17	67	0	2	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	c0002	1944	93	42	9	35	1	6	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	1/1	c0003	1944	72	2	24	22	5	17	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	c0004	1944	69	4	10	44	3	8	copy fasta	MAP9	chr4	155337658	155381965