JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAP9_chr4_155337658_155381965	0/0	c0005	1944	46	18	0	26	0	2	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	c0006	1944	17	3	9	3	1	1	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	c0007	1944	8	8	0	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	c0008	1944	3	3	0	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	c0009	1944	2	0	0	2	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	c0010	1944	2	0	0	0	0	2	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	c0011	1944	1	1	0	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	c0012	1944	1	0	0	1	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	c0013	1944	1	0	0	1	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	c0014	1944	1	0	0	1	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	c0015	1944	1	0	0	1	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	c0016	1944	1	0	1	0	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAP9_chr4_155337658_155381965	0/0	c0017	1944	1	0	0	1	0	0	copy fasta	MAP9	chr4	155337658	155381965
MAPK10_chr4_86005405_86365053	1/1	c0001	1395	162	63	30	43	6	18	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	c0002	1395	3	3	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	c0003	1395	2	0	0	2	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	c0004	1395	1	0	0	1	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	c0005	1395	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK10_chr4_86005405_86365053	0/0	c0006	1395	1	1	0	0	0	0	copy fasta	MAPK10	chr4	86005405	86365053
MAPK11_chr22_50258713_50275380	0/0	c0001	1095	282	72	61	109	13	27	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/1	c0002	1095	122	12	18	70	3	18	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	c0003	1095	7	7	0	0	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	c0004	1096	6	1	3	2	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	c0005	1096	3	0	0	3	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	c0006	1095	2	2	0	0	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	c0007	1095	2	0	1	0	0	1	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	c0008	1095	1	0	0	1	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	c0009	1095	1	0	1	0	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	0/0	c0010	1095	1	0	0	1	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK11_chr22_50258713_50275380	1/0	c0011	1095	1	0	0	0	0	0	copy fasta	MAPK11	chr22	50258713	50275380
MAPK12_chr22_50247901_50266683	0/0	c0001	1104	158	48	35	53	5	17	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/1	c0002	1104	124	25	17	61	4	16	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0003	1104	65	8	17	26	9	5	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0004	1104	45	9	9	26	0	1	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0005	1104	20	0	4	14	0	2	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	1/0	c0006	1104	7	2	0	4	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0007	1104	3	0	0	2	0	1	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0008	1104	2	2	0	0	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0009	1104	2	2	0	0	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0010	1104	2	0	0	2	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0011	1104	2	0	2	0	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0012	1104	1	0	0	0	0	1	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0013	1104	1	0	0	0	0	1	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0014	1104	1	0	0	1	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0015	1104	1	0	0	0	0	1	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0016	1104	1	1	0	0	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0017	1104	1	1	0	0	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0018	1104	1	0	1	0	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0019	1104	1	0	0	1	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0020	1104	1	0	0	1	0	0	copy fasta	MAPK12	chr22	50247901	50266683