JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAPK12_chr22_50247901_50266683	0/0	c0021	1104	1	0	1	0	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0022	1104	1	0	0	1	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0023	1104	1	0	0	1	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0024	1104	1	0	0	0	0	1	copy fasta	MAPK12	chr22	50247901	50266683
MAPK12_chr22_50247901_50266683	0/0	c0025	1104	1	0	0	1	0	0	copy fasta	MAPK12	chr22	50247901	50266683
MAPK13_chr6_36125513_36149521	0/1	c0001	1098	341	70	58	174	6	32	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	1/0	c0002	1098	71	17	21	10	8	14	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	c0003	1098	7	6	1	0	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	c0004	1098	2	0	0	2	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	c0005	1098	1	1	0	0	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	c0006	1098	1	1	0	0	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK13_chr6_36125513_36149521	0/0	c0007	1098	1	1	0	0	0	0	copy fasta	MAPK13	chr6	36125513	36149521
MAPK14_chr6_36022808_36116236	1/1	c0001	1083	335	86	57	155	10	25	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	c0002	1083	4	3	1	0	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	c0003	1083	1	0	0	0	0	1	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	c0004	1083	1	0	0	1	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK14_chr6_36022808_36116236	0/0	c0005	1083	1	1	0	0	0	0	copy fasta	MAPK14	chr6	36022808	36116236
MAPK15_chr8_143711349_143727458	0/1	c0001	1635	143	10	36	62	7	27	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0002	1635	129	30	25	64	2	8	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0003	1635	22	17	3	0	1	1	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0004	1635	18	13	1	0	0	4	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0005	1635	13	7	1	4	0	1	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0006	1635	13	1	4	7	1	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0007	1635	10	0	0	10	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0008	1635	5	5	0	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0009	1635	4	0	1	0	1	2	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0010	1635	4	4	0	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0011	1635	3	0	1	2	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0012	1635	3	2	1	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0013	1635	2	2	0	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0014	1635	2	0	2	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0015	1635	2	2	0	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0016	1635	2	0	0	0	0	2	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0017	1635	2	0	0	0	0	2	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0018	1635	2	1	1	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0019	1635	2	0	2	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0020	1635	2	0	0	2	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0021	1635	1	1	0	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0022	1635	1	0	1	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0023	1635	1	0	0	1	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0024	1635	1	1	0	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0025	1635	1	1	0	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0026	1635	1	0	0	1	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0027	1635	1	0	0	0	0	1	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0028	1635	1	0	1	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0029	1635	1	0	0	0	0	1	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0030	1635	1	0	0	1	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0031	1635	1	0	0	1	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0032	1635	1	0	0	1	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK15_chr8_143711349_143727458	0/0	c0033	1635	1	0	0	0	0	1	copy fasta	MAPK15	chr8	143711349	143727458