JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAPK15_chr8_143711349_143727458	0/0	c0034	1635	1	1	0	0	0	0	copy fasta	MAPK15	chr8	143711349	143727458
MAPK1IP1L_chr14_55046647_55075194	1/1	c0001	738	362	91	70	149	16	34	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	c0002	738	10	4	2	1	0	3	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	c0003	738	3	3	0	0	0	0	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1IP1L_chr14_55046647_55075194	0/0	c0004	738	1	0	0	0	0	1	copy fasta	MAPK1IP1L	chr14	55046647	55075194
MAPK1_chr22_21754657_21872645	1/1	c0001	1083	323	85	59	137	10	30	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	c0002	1086	7	2	3	0	0	2	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	c0003	1083	7	1	4	1	0	1	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	c0004	1083	4	4	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	c0005	1083	4	0	0	3	0	1	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	c0006	1083	1	1	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	c0007	1083	1	0	0	1	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK1_chr22_21754657_21872645	0/0	c0008	1083	1	1	0	0	0	0	copy fasta	MAPK1	chr22	21754657	21872645
MAPK3_chr16_30109105_30128220	1/1	c0001	1140	384	81	69	176	14	42	copy fasta	MAPK3	chr16	30109105	30128220
MAPK3_chr16_30109105_30128220	0/0	c0002	1140	1	0	1	0	0	0	copy fasta	MAPK3	chr16	30109105	30128220
MAPK3_chr16_30109105_30128220	0/0	c0003	1140	1	0	0	1	0	0	copy fasta	MAPK3	chr16	30109105	30128220
MAPK3_chr16_30109105_30128220	0/0	c0004	1140	1	1	0	0	0	0	copy fasta	MAPK3	chr16	30109105	30128220
MAPK3_chr16_30109105_30128220	0/0	c0005	1140	1	0	0	1	0	0	copy fasta	MAPK3	chr16	30109105	30128220
MAPK4_chr18_50555087_50736826	1/1	c0001	1764	165	63	29	42	7	22	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	c0002	1764	87	7	15	49	4	12	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	c0003	1764	20	0	3	17	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	c0004	1764	7	3	0	4	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	c0005	1764	5	5	0	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	c0006	1764	4	0	3	0	1	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	c0007	1764	3	0	0	3	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	c0008	1764	2	0	0	2	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	c0009	1764	2	2	0	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	c0010	1764	2	2	0	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	c0011	1764	1	0	0	1	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	c0012	1764	1	1	0	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	c0013	1764	1	1	0	0	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	c0014	1764	1	0	0	1	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK4_chr18_50555087_50736826	0/0	c0015	1764	1	0	0	1	0	0	copy fasta	MAPK4	chr18	50555087	50736826
MAPK6_chr15_52014219_52072375	1/1	c0001	2166	297	61	50	134	10	40	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	c0002	2166	48	16	16	12	1	3	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	c0003	2166	7	1	4	0	1	1	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	c0004	2166	2	0	0	2	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	c0005	2166	1	0	0	1	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK6_chr15_52014219_52072375	0/0	c0006	2166	1	0	0	1	0	0	copy fasta	MAPK6	chr15	52014219	52072375
MAPK7_chr17_19373498_19388544	1/1	c0001	2451	315	75	66	116	12	44	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	c0002	2451	19	0	0	19	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	c0003	2451	7	7	0	0	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	c0004	2451	4	4	0	0	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	c0005	2451	2	0	0	2	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	c0006	2451	2	0	0	2	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	c0007	2451	2	0	0	2	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	c0008	2451	1	1	0	0	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	c0009	2451	1	1	0	0	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	c0010	2451	1	0	0	1	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	c0011	2451	1	0	0	0	0	1	copy fasta	MAPK7	chr17	19373498	19388544