JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAPK7_chr17_19373498_19388544	0/0	c0012	2451	1	0	0	0	0	1	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	c0013	2451	1	0	0	1	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	c0014	2451	1	1	0	0	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	c0015	2451	1	0	1	0	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	c0016	2451	1	0	0	1	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	c0017	2451	1	1	0	0	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	c0018	2451	1	0	1	0	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK8IP1_chr11_45880651_45911465	1/1	c0001	2136	357	88	77	129	18	43	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	c0002	2136	13	0	0	8	0	5	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	c0003	2136	4	4	0	0	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	c0004	2136	3	2	1	0	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	c0005	2136	2	0	0	2	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	c0006	2136	2	0	0	2	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	c0007	2136	1	0	0	1	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	c0008	2136	1	0	1	0	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	c0009	2136	1	0	1	0	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	c0010	2124	1	0	0	1	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	c0011	2136	1	0	0	1	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	c0012	2136	1	1	0	0	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	c0013	2136	1	1	0	0	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	c0014	2136	1	0	0	1	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	c0015	2136	1	0	0	1	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	c0016	2136	1	0	0	1	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	c0017	2136	1	0	0	1	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP2_chr22_50595793_50618978	0/0	c0001	2475	185	14	38	111	7	15	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0002	2475	102	31	21	35	2	13	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0003	2475	62	7	8	37	1	9	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0004	2475	15	1	6	6	2	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0005	2475	11	0	4	0	1	6	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0006	2475	7	5	2	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0007	2475	7	7	0	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0008	2476	6	0	0	6	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0009	2475	6	3	1	0	0	2	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0010	2475	5	3	0	0	0	2	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0011	2475	5	5	0	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0012	2475	4	4	0	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0013	2475	3	0	1	1	0	1	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0014	2475	3	0	0	3	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0015	2475	3	2	0	0	0	1	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0016	2475	2	1	1	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0017	2476	2	0	0	2	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0018	2475	1	1	0	0	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0019	2475	1	0	0	0	0	1	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0020	2475	1	0	0	1	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0021	2475	1	0	0	1	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0022	2475	1	0	0	1	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0023	2476	1	0	0	1	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0024	2475	1	0	0	0	1	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	c0025	2475	1	0	0	1	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP3_chr16_1701195_1775351	0/0	c0001	4014	125	38	25	47	4	11	copy fasta	MAPK8IP3	chr16	1701195	1775351