JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAPK8IP3_chr16_1701195_1775351	0/0	c0002	4014	80	21	23	25	0	11	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/1	c0003	4014	54	1	7	40	1	4	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0004	4014	20	4	3	6	1	6	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	1/0	c0005	4014	8	5	0	2	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0006	4014	4	0	0	4	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0007	4014	3	0	0	3	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0008	4014	3	3	0	0	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0009	4014	3	0	2	0	1	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0010	4014	2	2	0	0	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0011	4014	2	0	0	2	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0012	4014	2	0	0	2	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0013	4014	2	1	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0014	4014	2	1	1	0	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0015	4014	2	1	1	0	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0016	4014	1	0	0	0	0	1	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0017	4010	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0018	4014	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0019	4014	1	1	0	0	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0020	4014	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0021	4014	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0022	4014	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0023	4014	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0024	4014	1	1	0	0	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0025	4014	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0026	4014	1	1	0	0	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0027	4014	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0028	4014	1	0	0	0	1	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0029	4014	1	1	0	0	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0030	4014	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0031	4014	1	0	0	0	0	1	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0032	4014	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	c0033	4014	1	1	0	0	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8_chr10_48301677_48444360	1/1	c0001	1284	302	92	49	125	10	24	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	c0002	1284	2	0	0	2	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	c0003	1284	1	0	0	1	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	c0004	1284	1	0	1	0	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK9_chr5_180228143_180297083	1/1	c0001	1275	369	88	68	151	16	44	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	c0002	1275	2	2	0	0	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	c0003	1275	1	0	0	1	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPKAP1_chr9_125432394_125712208	1/0	c0001	1569	255	75	44	94	10	31	copy fasta	MAPKAP1	chr9	125432394	125712208
MAPKAP1_chr9_125432394_125712208	0/1	c0002	1569	41	0	8	25	2	5	copy fasta	MAPKAP1	chr9	125432394	125712208
MAPKAP1_chr9_125432394_125712208	0/0	c0003	1569	2	1	1	0	0	0	copy fasta	MAPKAP1	chr9	125432394	125712208
MAPKAP1_chr9_125432394_125712208	0/0	c0004	1569	1	0	1	0	0	0	copy fasta	MAPKAP1	chr9	125432394	125712208
MAPKAP1_chr9_125432394_125712208	0/0	c0005	1569	1	0	0	1	0	0	copy fasta	MAPKAP1	chr9	125432394	125712208
MAPKAPK2_chr1_206679905_206739281	1/1	c0001	1203	298	50	60	149	13	24	copy fasta	MAPKAPK2	chr1	206679905	206739281
MAPKAPK2_chr1_206679905_206739281	0/0	c0002	1203	26	9	6	7	1	3	copy fasta	MAPKAPK2	chr1	206679905	206739281
MAPKAPK2_chr1_206679905_206739281	0/0	c0003	1203	16	14	1	0	0	1	copy fasta	MAPKAPK2	chr1	206679905	206739281
MAPKAPK2_chr1_206679905_206739281	0/0	c0004	1203	16	0	3	6	2	5	copy fasta	MAPKAPK2	chr1	206679905	206739281
MAPKAPK2_chr1_206679905_206739281	0/0	c0005	1203	10	10	0	0	0	0	copy fasta	MAPKAPK2	chr1	206679905	206739281
MAPKAPK2_chr1_206679905_206739281	0/0	c0006	1203	4	3	1	0	0	0	copy fasta	MAPKAPK2	chr1	206679905	206739281