JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAPKAPK2_chr1_206679905_206739281	0/0	c0007	1203	4	0	0	0	0	4	copy fasta	MAPKAPK2	chr1	206679905	206739281
MAPKAPK2_chr1_206679905_206739281	0/0	c0008	1203	2	0	0	2	0	0	copy fasta	MAPKAPK2	chr1	206679905	206739281
MAPKAPK2_chr1_206679905_206739281	0/0	c0009	1203	2	0	2	0	0	0	copy fasta	MAPKAPK2	chr1	206679905	206739281
MAPKAPK2_chr1_206679905_206739281	0/0	c0010	1203	1	0	1	0	0	0	copy fasta	MAPKAPK2	chr1	206679905	206739281
MAPKAPK2_chr1_206679905_206739281	0/0	c0011	1203	1	0	0	0	0	1	copy fasta	MAPKAPK2	chr1	206679905	206739281
MAPKAPK2_chr1_206679905_206739281	0/0	c0012	1203	1	1	0	0	0	0	copy fasta	MAPKAPK2	chr1	206679905	206739281
MAPKAPK2_chr1_206679905_206739281	0/0	c0013	1203	1	1	0	0	0	0	copy fasta	MAPKAPK2	chr1	206679905	206739281
MAPKAPK3_chr3_50612151_50654291	1/1	c0001	1149	324	68	59	155	14	26	copy fasta	MAPKAPK3	chr3	50612151	50654291
MAPKAPK3_chr3_50612151_50654291	0/0	c0002	1149	1	0	0	1	0	0	copy fasta	MAPKAPK3	chr3	50612151	50654291
MAPKAPK3_chr3_50612151_50654291	0/0	c0003	1124	1	0	1	0	0	0	copy fasta	MAPKAPK3	chr3	50612151	50654291
MAPKAPK5_chr12_111837228_111907222	1/1	c0001	1416	333	85	54	147	8	37	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	c0002	1416	12	0	0	12	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	c0003	1416	3	0	0	3	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	c0004	1416	3	3	0	0	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	c0005	1416	1	0	0	0	0	1	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKBP1_chr15_41769484_41832855	0/0	c0001	4527	98	43	19	25	1	10	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/1	c0002	4527	67	0	25	30	3	8	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	1/0	c0003	4527	62	3	15	37	1	5	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0004	4527	56	26	10	3	6	11	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0005	4527	11	0	0	11	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0006	4527	5	1	1	3	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0007	4527	3	0	0	3	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0008	4527	3	3	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0009	4527	2	2	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0010	4527	2	0	0	2	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0011	4527	1	1	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0012	4527	1	1	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0013	4527	1	0	0	0	0	1	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0014	4527	1	1	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0015	4527	1	0	0	0	1	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0016	4527	1	0	1	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0017	4527	1	1	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0018	4527	1	0	0	1	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0019	4527	1	0	0	1	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0020	4527	1	0	1	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0021	4527	1	0	0	0	0	1	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0022	4527	1	0	0	0	0	1	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0023	4527	1	1	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0024	4527	1	0	0	1	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0025	4527	1	1	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0026	4527	1	1	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0027	4527	1	0	0	1	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0028	4527	1	1	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	c0029	4527	1	0	0	0	0	1	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPRE1_chr20_32814954_32855405	1/1	c0001	807	244	53	61	88	9	31	copy fasta	MAPRE1	chr20	32814954	32855405
MAPRE1_chr20_32814954_32855405	0/0	c0002	807	128	43	8	62	3	12	copy fasta	MAPRE1	chr20	32814954	32855405
MAPRE1_chr20_32814954_32855405	0/0	c0003	807	11	0	2	9	0	0	copy fasta	MAPRE1	chr20	32814954	32855405
MAPRE1_chr20_32814954_32855405	0/0	c0004	807	1	0	0	1	0	0	copy fasta	MAPRE1	chr20	32814954	32855405
MAPRE1_chr20_32814954_32855405	0/0	c0005	807	1	0	0	0	0	1	copy fasta	MAPRE1	chr20	32814954	32855405
MAPRE1_chr20_32814954_32855405	0/0	c0006	807	1	0	1	0	0	0	copy fasta	MAPRE1	chr20	32814954	32855405