JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAPRE2_chr18_35036413_35148470	1/1	c0001	984	367	86	63	175	8	33	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	c0002	984	1	0	0	1	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	c0003	984	1	0	0	0	0	1	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	c0004	984	1	0	1	0	0	0	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE3_chr2_26965637_27032219	0/1	c0001	846	187	64	42	49	12	19	copy fasta	MAPRE3	chr2	26965637	27032219
MAPRE3_chr2_26965637_27032219	1/0	c0002	846	70	22	8	37	2	0	copy fasta	MAPRE3	chr2	26965637	27032219
MAPRE3_chr2_26965637_27032219	0/0	c0003	846	1	0	0	0	0	1	copy fasta	MAPRE3	chr2	26965637	27032219
MAPT_chr17_45889554_46033334	0/0	c0001	2502	119	40	28	32	8	11	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	c0002	2502	43	3	9	24	1	6	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/1	c0003	2502	25	0	8	14	0	2	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	c0004	2502	21	2	8	1	4	6	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	c0005	2502	13	12	1	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	c0006	2502	6	1	4	1	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	c0007	2502	6	2	2	0	1	1	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	c0008	2502	4	4	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	c0009	2502	3	3	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	c0010	2502	2	2	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	c0011	2502	2	2	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	c0012	2502	1	1	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	c0013	2502	1	1	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	c0014	2502	1	0	1	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	c0015	2502	1	0	0	1	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	c0016	2502	1	0	1	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	c0017	2502	1	0	0	1	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	c0018	2502	1	1	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	c0019	2502	1	1	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	c0020	2502	1	1	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MARCHF10_chr17_62696314_62813314	1/0	c0001	2427	178	40	31	78	4	24	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0002	2427	65	14	17	19	4	11	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0003	2427	7	5	2	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0004	2427	3	0	0	3	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0005	2427	3	2	1	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0006	2427	3	3	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0007	2427	2	1	1	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0008	2427	2	1	1	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0009	2427	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0010	2427	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0011	2427	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/1	c0012	2427	1	0	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0013	2427	1	0	1	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0014	2427	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0015	2427	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0016	2427	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0017	2427	1	0	0	1	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0018	2427	1	0	0	1	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0019	2427	1	0	0	0	0	1	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0020	2427	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0021	2427	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0022	2427	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0023	2427	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314