JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MARCHF10_chr17_62696314_62813314	0/0	c0024	2427	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	c0025	2427	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF11_chr5_16062139_16184791	1/1	c0001	1209	288	81	46	122	12	25	copy fasta	MARCHF11	chr5	16062139	16184791
MARCHF11_chr5_16062139_16184791	0/0	c0002	1209	3	2	1	0	0	0	copy fasta	MARCHF11	chr5	16062139	16184791
MARCHF11_chr5_16062139_16184791	0/0	c0003	1209	2	0	0	2	0	0	copy fasta	MARCHF11	chr5	16062139	16184791
MARCHF11_chr5_16062139_16184791	0/0	c0004	1209	1	0	0	1	0	0	copy fasta	MARCHF11	chr5	16062139	16184791
MARCHF11_chr5_16062139_16184791	0/0	c0005	1209	1	0	0	1	0	0	copy fasta	MARCHF11	chr5	16062139	16184791
MARCHF11_chr5_16062139_16184791	0/0	c0006	1209	1	0	0	0	0	1	copy fasta	MARCHF11	chr5	16062139	16184791
MARCHF11_chr5_16062139_16184791	0/0	c0007	1209	1	0	1	0	0	0	copy fasta	MARCHF11	chr5	16062139	16184791
MARCHF11_chr5_16062139_16184791	0/0	c0008	1209	1	1	0	0	0	0	copy fasta	MARCHF11	chr5	16062139	16184791
MARCHF1_chr4_163519718_164389019	0/0	c0001	1638	58	33	6	15	0	4	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	c0002	1638	23	7	6	7	0	3	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	c0003	1638	9	2	0	6	0	1	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	c0004	1638	5	2	1	2	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	c0005	1638	2	2	0	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	c0006	1638	2	2	0	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	c0007	1638	1	0	1	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	c0008	1638	1	0	0	1	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	c0009	1638	1	0	0	1	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF2_chr19_8408305_8444017	1/1	c0001	741	282	80	42	123	7	28	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	c0002	741	84	3	26	37	7	11	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	c0003	741	17	2	6	0	2	7	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	c0004	741	5	5	0	0	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	c0005	741	1	0	0	1	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	c0006	741	1	1	0	0	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	c0007	741	1	1	0	0	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	c0008	741	1	0	0	1	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF3_chr5_126862714_127035558	1/1	c0001	762	284	78	41	121	7	35	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	c0002	762	5	0	0	5	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	c0003	762	2	1	0	0	0	1	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	c0004	762	1	0	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	c0005	762	1	1	0	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	c0006	762	1	0	0	0	1	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	c0007	762	1	0	0	1	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	c0008	762	1	0	0	1	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF4_chr2_216252865_216377483	1/0	c0001	1233	167	59	29	65	4	9	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/1	c0002	1233	142	23	24	72	4	18	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	c0003	1233	7	6	1	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	c0004	1233	4	4	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	c0005	1233	3	3	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	c0006	1233	3	3	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	c0007	1233	1	0	0	1	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	c0008	1233	1	0	0	1	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	c0009	1233	1	0	0	1	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	c0010	1233	1	0	0	0	0	1	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF5_chr10_92286167_92358964	1/1	c0001	837	302	72	62	116	14	36	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	c0002	837	1	0	0	0	0	1	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	c0003	837	1	1	0	0	0	0	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	c0004	837	1	0	0	0	0	1	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	c0005	837	1	1	0	0	0	0	copy fasta	MARCHF5	chr10	92286167	92358964