JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MARCHF6_chr5_10348695_10445388	1/1	c0001	2733	255	58	55	107	6	27	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	c0002	2733	16	15	1	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	c0003	2733	5	5	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	c0004	2733	3	3	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	c0005	2733	1	0	0	0	0	1	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	c0006	2733	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	c0007	2733	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	c0008	2733	1	1	0	0	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	c0009	2733	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF7_chr2_159707506_159776027	0/0	c0001	2115	102	32	12	44	4	10	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	c0002	2115	102	1	31	63	3	4	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	1/0	c0003	2115	47	2	1	38	2	3	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	c0004	2115	42	35	5	0	0	2	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	c0005	2115	28	0	0	28	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/1	c0006	2115	11	0	5	4	0	1	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	c0007	2115	9	3	1	0	3	2	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	c0008	2115	7	0	6	0	1	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	c0009	2115	6	3	0	2	0	1	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	c0010	2115	1	0	0	1	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	c0011	2115	1	0	0	0	1	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	c0012	2115	1	0	0	0	0	1	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	c0013	2115	1	1	0	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	c0014	2115	1	0	0	0	0	1	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	c0015	2115	1	0	0	0	0	1	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	c0016	2115	1	0	0	1	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	c0017	2115	1	0	1	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	c0018	2115	1	0	0	1	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	c0019	2115	1	1	0	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF8_chr10_45449585_45540371	1/0	c0001	1722	205	45	37	92	8	22	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/1	c0002	1722	74	14	27	16	4	12	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	c0003	1722	29	13	5	11	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	c0004	1722	29	1	0	23	3	2	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	c0005	1722	1	1	0	0	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	c0006	1722	1	0	0	0	0	1	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	c0007	1722	1	0	0	0	0	1	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	c0008	1722	1	0	0	1	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	c0009	1722	1	0	1	0	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	c0010	1722	1	1	0	0	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	c0011	1722	1	0	0	1	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	c0012	1722	1	0	0	1	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	c0013	1722	1	0	0	0	1	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	c0014	1722	1	1	0	0	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	c0015	1722	1	0	0	1	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF9_chr12_57750103_57765411	0/1	c0001	1041	323	68	67	136	14	37	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	1/0	c0002	1041	32	24	2	0	0	5	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	c0003	1041	1	0	0	1	0	0	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	c0004	1041	1	0	1	0	0	0	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	c0005	1041	1	0	0	1	0	0	copy fasta	MARCHF9	chr12	57750103	57765411
MARCKSL1_chr1_32328839_32341233	1/1	c0001	588	207	74	43	62	6	20	copy fasta	MARCKSL1	chr1	32328839	32341233
MARCKSL1_chr1_32328839_32341233	0/0	c0002	588	1	0	1	0	0	0	copy fasta	MARCKSL1	chr1	32328839	32341233