JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MARCKS_chr6_113852345_113868475	1/1	c0001	999	401	77	64	203	14	41	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	c0002	999	10	0	0	10	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	c0003	999	9	9	0	0	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	c0004	999	6	0	6	0	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	c0005	999	6	0	0	6	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	c0006	999	4	0	0	4	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	c0007	999	2	2	0	0	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	c0008	999	1	0	0	1	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	c0009	999	1	1	0	0	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	c0010	999	1	0	0	0	0	1	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	c0011	999	1	1	0	0	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCOL_chr5_148233525_148248580	0/1	c0001	858	300	40	52	169	7	31	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	0/0	c0002	858	63	38	1	24	0	0	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	1/0	c0003	858	31	10	2	10	1	7	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	0/0	c0004	858	12	0	0	12	0	0	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	0/0	c0005	858	7	6	1	0	0	0	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	0/0	c0006	831	3	2	1	0	0	0	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	0/0	c0007	858	1	0	0	1	0	0	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	0/0	c0008	858	1	0	1	0	0	0	copy fasta	MARCOL	chr5	148233525	148248580
MARCO_chr2_118937194_118999660	1/1	c0001	1563	303	42	63	147	17	32	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	c0002	1563	62	35	3	14	0	10	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	c0003	1563	9	8	1	0	0	0	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	c0004	1563	3	0	0	0	1	2	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	c0005	1563	2	2	0	0	0	0	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	c0006	1563	2	2	0	0	0	0	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	c0007	1563	2	2	0	0	0	0	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	c0008	1563	2	0	2	0	0	0	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	c0009	1563	1	0	0	0	0	1	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	c0010	1563	1	0	0	1	0	0	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	c0011	1563	1	0	0	0	0	1	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	c0012	1563	1	1	0	0	0	0	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	c0013	1563	1	1	0	0	0	0	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	c0014	1563	1	0	0	1	0	0	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	c0015	1563	1	0	0	1	0	0	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	c0016	1563	1	0	1	0	0	0	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	c0017	1563	1	1	0	0	0	0	copy fasta	MARCO	chr2	118937194	118999660
MARF1_chr16_15589387_15648154	0/0	c0001	5229	351	83	65	155	13	35	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	c0002	5229	16	0	6	7	2	1	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	c0003	5229	4	4	0	0	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	c0004	5229	4	0	0	2	1	1	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	c0005	5229	3	2	1	0	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	c0006	5229	2	2	0	0	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	c0007	5229	2	0	2	0	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	c0008	5229	2	0	0	2	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	c0009	5229	1	0	0	0	0	1	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	c0010	5229	1	0	0	1	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	c0011	5229	1	0	1	0	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/1	c0012	5229	1	0	0	0	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	c0013	5229	1	0	0	1	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	c0014	5229	1	0	0	1	0	0	copy fasta	MARF1	chr16	15589387	15648154