JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MARF1_chr16_15589387_15648154	0/0	c0015	5229	1	0	0	1	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	c0016	5229	1	0	1	0	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	c0017	5229	1	1	0	0	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARK1_chr1_220523136_220669461	1/1	c0001	2388	290	78	46	125	10	29	copy fasta	MARK1	chr1	220523136	220669461
MARK1_chr1_220523136_220669461	0/0	c0002	2388	4	3	0	0	0	1	copy fasta	MARK1	chr1	220523136	220669461
MARK1_chr1_220523136_220669461	0/0	c0003	2388	2	0	0	0	0	2	copy fasta	MARK1	chr1	220523136	220669461
MARK1_chr1_220523136_220669461	0/0	c0004	2388	1	0	0	1	0	0	copy fasta	MARK1	chr1	220523136	220669461
MARK1_chr1_220523136_220669461	0/0	c0005	2388	1	1	0	0	0	0	copy fasta	MARK1	chr1	220523136	220669461
MARK2_chr11_63834110_63916020	0/0	c0001	2367	210	70	49	45	14	32	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	c0002	2367	11	11	0	0	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	c0003	2367	5	4	1	0	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	c0004	2367	3	3	0	0	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	c0005	2367	2	0	2	0	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	c0006	2367	1	0	0	1	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK3_chr14_103380415_103508831	1/1	c0001	2262	317	50	65	149	12	39	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	c0002	2262	15	14	1	0	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	c0003	2262	3	3	0	0	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	c0004	2262	3	3	0	0	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	c0005	2262	1	0	1	0	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	c0006	2262	1	0	0	0	0	1	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	c0007	2262	1	0	1	0	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	c0008	2262	1	1	0	0	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	c0009	2262	1	1	0	0	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	c0010	2262	1	0	0	1	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	c0011	2262	1	0	0	1	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	c0012	2262	1	1	0	0	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	c0013	2262	1	1	0	0	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	c0014	2262	1	0	0	1	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK4_chr19_45246271_45310284	0/1	c0001	2259	242	81	48	66	14	32	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	c0002	2259	7	6	1	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	c0003	2259	2	0	0	0	0	2	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	1/0	c0004	2259	2	0	0	0	0	1	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	c0005	2259	1	0	0	0	0	1	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	c0006	2259	1	0	0	1	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	c0007	2259	1	0	1	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	c0008	2259	1	1	0	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	c0009	2259	1	1	0	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	c0010	2259	1	0	0	1	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	c0011	2259	1	1	0	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARS1_chr12_57483068_57521652	1/1	c0001	2703	249	67	48	90	10	32	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	c0002	2703	11	0	0	10	0	1	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	c0003	2703	6	6	0	0	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	c0004	2703	6	0	0	6	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	c0005	2703	3	3	0	0	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	c0006	2703	2	0	0	2	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	c0007	2703	1	1	0	0	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	c0008	2703	1	0	1	0	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	c0009	2703	1	0	0	1	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	c0010	2703	1	1	0	0	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	c0011	2703	1	0	0	1	0	0	copy fasta	MARS1	chr12	57483068	57521652