JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MARS1_chr12_57483068_57521652	0/0	c0012	2703	1	0	1	0	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	c0013	2703	1	0	0	0	0	1	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	c0014	2703	1	1	0	0	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	c0015	2703	1	1	0	0	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	c0016	2703	1	0	0	1	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	c0017	2703	1	0	0	1	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS2_chr2_197700369_197713395	1/0	c0001	1782	355	59	66	176	16	37	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	c0002	1782	5	5	0	0	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	c0003	1782	5	5	0	0	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	c0004	1782	4	0	4	0	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	c0005	1782	2	0	0	2	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	c0006	1782	2	0	0	2	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	c0007	1782	1	0	0	0	0	1	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	c0008	1782	1	0	0	1	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	c0009	1782	1	0	0	0	0	1	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	c0010	1782	1	1	0	0	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	c0011	1782	1	1	0	0	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	c0012	1782	1	1	0	0	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	c0013	1782	1	0	0	1	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	c0014	1782	1	0	0	0	0	1	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/1	c0015	1782	1	0	0	0	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARVELD1_chr10_97708730_97723150	0/0	c0001	522	198	55	29	91	3	20	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	1/1	c0002	522	172	40	36	58	13	23	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	c0003	522	56	1	9	41	2	3	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	c0004	522	1	0	0	1	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	c0005	522	1	0	0	1	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD2_chr5_69410116_69449330	0/0	c0001	1677	192	57	30	83	5	17	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/1	c0002	1677	147	22	28	79	3	14	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	c0003	1677	1	1	0	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	c0004	1677	1	1	0	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	c0005	1677	1	0	0	1	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	c0006	1677	1	1	0	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	c0007	1677	1	0	0	1	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	c0008	1677	1	0	0	0	0	1	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD3_chr16_71621184_71641465	0/0	c0001	1206	161	20	28	94	5	14	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	1/0	c0002	1206	151	44	31	50	4	21	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/1	c0003	1206	58	24	14	8	4	7	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	c0004	1206	3	3	0	0	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	c0005	1206	1	0	0	1	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	c0006	1206	1	0	0	1	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	c0007	1206	1	1	0	0	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	c0008	1206	1	0	0	1	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	c0009	1206	1	1	0	0	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	c0010	1206	1	0	0	0	1	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	c0011	1206	1	1	0	0	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	c0012	1206	1	0	1	0	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	c0013	1206	1	1	0	0	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	c0014	1206	1	0	0	1	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	c0015	1206	1	1	0	0	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MAS1L_chr6_29481697_29492956	0/1	c0001	1137	328	56	68	157	11	35	copy fasta	MAS1L	chr6	29481697	29492956