JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAS1L_chr6_29481697_29492956	0/0	c0002	1137	29	3	2	24	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	c0003	1137	29	6	2	19	0	2	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	c0004	1137	14	13	1	0	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	c0005	1137	3	3	0	0	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	c0006	1137	3	3	0	0	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	c0007	1137	3	3	0	0	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	c0008	1137	3	3	0	0	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	c0009	1137	3	0	0	3	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	c0010	1137	2	2	0	0	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	c0011	1137	2	1	1	0	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	c0012	1137	2	0	0	1	0	1	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	c0013	1137	2	0	0	0	0	2	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	c0014	1137	1	1	0	0	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	c0015	1137	1	0	1	0	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	c0016	1137	1	0	0	1	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	c0017	1137	1	0	1	0	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	c0018	1137	1	0	0	0	1	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	c0019	1137	1	0	0	1	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	c0020	1137	1	1	0	0	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	c0021	1137	1	1	0	0	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1_chr6_159885988_159922447	1/1	c0001	978	203	63	52	49	10	27	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	c0002	978	139	28	19	77	4	11	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	c0003	978	5	5	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	c0004	978	1	0	1	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MASP1_chr3_187212282_187296737	1/1	c0001	2100	354	69	53	170	13	47	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	c0002	2100	10	10	0	0	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	c0003	2100	5	5	0	0	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	c0004	2100	3	0	0	3	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	c0005	2100	3	2	1	0	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	c0006	2100	1	1	0	0	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	c0007	2100	1	0	0	1	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	c0008	2100	1	0	0	1	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	c0009	2100	1	0	0	0	1	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	c0010	2100	1	1	0	0	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	c0011	2100	1	0	0	1	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	c0012	2100	1	0	0	1	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	c0013	2100	1	0	0	0	0	1	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	c0014	2100	1	0	0	1	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187229082_187296737	0/0	c0001	2187	197	20	26	119	3	29	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	c0002	2187	76	27	7	30	5	7	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	c0003	2187	64	2	21	30	4	7	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/1	c0004	2187	17	12	0	0	1	3	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	1/0	c0005	2187	15	14	0	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	c0006	2187	9	9	0	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	c0007	2187	6	0	1	3	0	2	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	c0008	2187	3	0	0	3	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	c0009	2187	3	3	0	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	c0010	2187	2	0	0	2	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	c0011	2187	1	1	0	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	c0012	2187	1	0	0	1	0	0	copy fasta	MASP1	chr3	187229082	187296737