JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MASP1_chr3_187229082_187296737	0/0	c0013	2187	1	0	0	1	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	c0014	2187	1	0	0	0	1	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	c0015	2187	1	1	0	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	c0016	2187	1	0	1	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	c0017	2187	1	1	0	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	c0018	2187	1	0	0	1	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP2_chr1_11021523_11052239	0/1	c0001	2061	153	10	42	71	5	24	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	1/0	c0002	2061	48	5	12	22	0	8	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0003	2061	26	2	3	15	1	5	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0004	2061	16	15	1	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0005	2061	14	1	0	13	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0006	2061	12	11	0	0	0	1	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0007	2061	9	8	1	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0008	2061	6	6	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0009	2061	6	0	3	1	0	2	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0010	2061	6	5	1	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0011	2061	6	6	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0012	2061	5	5	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0013	2061	5	5	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0014	2061	5	0	0	5	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0015	2061	3	3	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0016	2061	3	0	0	3	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0017	2061	2	2	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0018	2061	2	2	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0019	2061	2	1	1	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0020	2061	2	0	2	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0021	2061	2	2	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0022	2061	1	0	0	0	0	1	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0023	2061	1	1	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0024	2061	1	1	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0025	2061	1	0	0	0	0	1	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0026	2061	1	0	0	0	0	1	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0027	2061	1	0	0	1	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0028	2061	1	1	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0029	2061	1	0	0	1	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0030	2061	1	1	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0031	2061	1	1	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0032	2061	1	1	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0033	2061	1	0	0	0	0	1	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	c0034	2061	1	1	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MAST1_chr19_12833515_12879952	0/0	c0001	4713	150	36	27	67	6	14	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	1/0	c0002	4713	122	22	32	48	4	15	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	c0003	4713	14	13	1	0	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	c0004	4713	4	4	0	0	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	c0005	4713	4	4	0	0	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	c0006	4713	3	0	0	3	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	c0007	4713	2	2	0	0	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	c0008	4713	2	2	0	0	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	c0009	4713	2	2	0	0	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	c0010	4713	1	1	0	0	0	0	copy fasta	MAST1	chr19	12833515	12879952