JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAST1_chr19_12833515_12879952	0/1	c0011	4713	1	0	0	0	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	c0012	4713	1	0	0	1	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	c0013	4713	1	0	0	1	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	c0014	4713	1	0	0	1	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	c0015	4713	1	0	0	1	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	c0016	4713	1	1	0	0	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	c0017	4713	1	0	0	1	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	c0018	4713	1	0	0	0	0	1	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	c0019	4713	1	1	0	0	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	c0020	4713	1	0	1	0	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	c0021	4713	1	0	1	0	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	c0022	4713	1	0	0	1	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST2_chr1_45798612_46041122	0/0	c0001	5397	102	27	16	43	3	13	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0002	5397	67	21	17	21	2	6	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0003	5397	20	0	3	16	0	1	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0004	5397	16	4	10	0	0	2	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/1	c0005	5397	9	0	3	0	3	2	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0006	5397	9	0	0	9	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0007	5397	8	8	0	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0008	5397	6	0	5	0	1	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0009	5397	6	6	0	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0010	5397	4	1	2	0	1	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0011	5397	4	4	0	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0012	5397	3	0	0	3	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0013	5397	3	3	0	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0014	5397	2	1	1	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0015	5397	2	0	0	2	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0016	5397	2	0	0	2	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0017	5397	2	0	0	2	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0018	5397	2	0	0	0	0	2	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0019	5397	2	0	0	0	0	2	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0020	5397	2	0	0	2	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0021	5397	1	1	0	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0022	5397	1	0	0	0	1	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0023	5397	1	1	0	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0024	5397	1	0	1	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0025	5397	1	0	0	0	1	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0026	5397	1	1	0	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0027	5397	1	0	0	0	0	1	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0028	5397	1	1	0	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0029	5397	1	1	0	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0030	5397	1	0	0	1	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0031	5397	1	0	1	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0032	5397	1	0	1	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0033	5397	1	1	0	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	1/0	c0034	5397	1	0	0	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0035	5397	1	1	0	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0036	5397	1	0	0	0	0	1	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	c0037	5397	1	0	0	1	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST3_chr19_18092778_18156687	0/0	c0001	4044	117	21	22	53	4	17	copy fasta	MAST3	chr19	18092778	18156687