JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAST3_chr19_18092778_18156687	0/1	c0002	4044	99	26	17	42	6	7	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	1/0	c0003	4044	16	10	3	1	0	1	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0004	4044	10	0	5	4	0	1	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0005	4044	10	9	1	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0006	4044	7	2	1	4	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0007	4044	6	6	0	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0008	4044	5	4	1	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0009	4044	4	0	3	0	0	1	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0010	4044	3	0	1	2	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0011	4044	2	2	0	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0012	4044	2	0	2	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0013	4044	1	0	1	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0014	4044	1	0	0	1	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0015	4044	1	0	0	0	0	1	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0016	4044	1	0	0	1	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0017	4044	1	1	0	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0018	4044	1	0	0	1	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0019	4044	1	1	0	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0020	4044	1	1	0	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0021	4044	1	1	0	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0022	4044	1	0	0	1	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0023	4044	1	0	0	1	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0024	4078	1	0	1	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0025	4044	1	0	0	1	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0026	4044	1	0	0	1	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	c0027	4044	1	0	0	1	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST4_chr5_66591393_67174593	0/0	c0001	7872	20	7	7	2	0	4	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0002	7872	16	16	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0003	7872	9	4	1	2	0	2	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0004	7875	7	1	1	0	2	3	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0005	7872	6	6	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	1/0	c0006	7872	5	1	2	0	0	1	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0007	7872	4	4	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0008	7872	3	2	0	1	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0009	7872	3	2	0	1	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0010	7872	2	2	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0011	7872	2	2	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0012	7872	2	2	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0013	7872	2	2	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0014	7872	2	2	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0015	7872	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0016	7872	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0017	7872	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0018	7875	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0019	7875	1	0	1	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0020	7872	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0021	7872	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0022	7872	1	0	0	1	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0023	7872	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0024	7872	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593