JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKRD30B_chr18_14743172_14859667	0/0	c0042	4578	1	1	0	0	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0043	4578	1	0	1	0	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0044	4578	1	1	0	0	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0045	4578	1	1	0	0	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	1/0	c0046	4578	1	0	0	0	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0047	4221	1	1	0	0	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0048	4221	1	0	0	1	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0049	15460	1	0	0	1	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0050	4578	1	0	0	1	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0051	4578	1	0	0	1	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0052	4221	1	0	0	0	0	1	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0053	4578	1	1	0	0	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0054	4578	1	0	0	1	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0055	4578	1	1	0	0	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0056	4578	1	0	0	0	1	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0057	4578	1	0	0	1	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0058	15464	1	0	0	1	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0059	4578	1	0	1	0	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0060	4578	1	0	0	1	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0061	4578	1	0	0	1	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0062	4578	1	1	0	0	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0063	4578	1	1	0	0	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0064	4578	1	0	1	0	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD30B_chr18_14743172_14859667	0/0	c0065	4578	1	0	1	0	0	0	copy fasta	ANKRD30B	chr18	14743172	14859667
ANKRD31_chr5_75063297_75241878	1/0	c0001	5793	103	12	21	54	4	11	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0002	5790	61	4	10	35	2	10	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0003	5790	50	1	7	38	1	3	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0004	5790	16	13	3	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0005	5790	13	13	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0006	5790	12	8	1	3	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0007	5790	11	1	0	8	0	2	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0008	5790	11	9	2	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0009	5790	10	8	2	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0010	5790	6	0	0	6	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0011	5790	4	1	1	0	1	1	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0012	5790	4	4	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0013	5790	3	0	0	3	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/1	c0014	5793	3	0	2	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0015	5793	2	1	0	0	0	1	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0016	5793	2	0	0	2	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0017	5790	2	2	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0018	5790	2	2	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0019	5790	1	0	1	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0020	5790	1	0	1	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0021	5790	1	0	1	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0022	5790	1	0	0	1	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0023	5793	1	1	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0024	5790	1	1	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0025	5790	1	0	0	1	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0026	5790	1	1	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878