JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAST4_chr5_66591393_67174593	0/0	c0025	7872	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0026	7872	1	0	1	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0027	7857	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0028	7872	1	0	1	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0029	7872	1	0	1	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/1	c0030	7872	1	0	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0031	7872	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0032	7872	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0033	7872	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0034	7872	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0035	7872	1	0	0	1	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0036	7872	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0037	7872	1	0	1	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0038	7872	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	c0039	7872	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MASTL_chr10_27150352_27192953	1/0	c0001	2640	144	40	33	58	3	9	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/1	c0002	2640	141	37	37	52	3	11	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	c0003	2640	51	9	2	34	1	5	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	c0004	2640	24	0	0	24	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	c0005	2640	20	0	0	19	1	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	c0006	2640	2	2	0	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	c0007	2640	2	0	0	0	2	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	c0008	2640	2	0	2	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	c0009	2640	2	0	1	0	0	1	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	c0010	2640	1	0	0	0	0	1	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	c0011	2640	1	1	0	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	c0012	2640	1	0	0	1	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	c0013	2640	1	0	0	0	0	1	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	c0014	2640	1	1	0	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	c0015	2640	1	1	0	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	c0016	2640	1	0	1	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	c0017	2640	1	1	0	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	c0018	2640	1	0	0	1	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	c0019	2640	1	0	0	1	0	0	copy fasta	MASTL	chr10	27150352	27192953
MAT1A_chr10_80266820_80294658	0/0	c0001	1188	203	71	40	61	5	26	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	c0002	1188	111	11	18	62	6	14	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	1/1	c0003	1188	46	3	20	9	5	7	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	c0004	1188	5	5	0	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	c0005	1188	2	0	0	2	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	c0006	1188	2	2	0	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	c0007	1188	1	0	1	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	c0008	1188	1	0	0	0	0	1	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	c0009	1188	1	0	1	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT2A_chr2_85534168_85550281	0/0	c0001	1188	206	68	30	79	9	20	copy fasta	MAT2A	chr2	85534168	85550281
MAT2A_chr2_85534168_85550281	1/1	c0002	1188	200	20	45	97	9	27	copy fasta	MAT2A	chr2	85534168	85550281
MAT2A_chr2_85534168_85550281	0/0	c0003	1188	8	0	0	7	0	1	copy fasta	MAT2A	chr2	85534168	85550281
MAT2A_chr2_85534168_85550281	0/0	c0004	1188	2	2	0	0	0	0	copy fasta	MAT2A	chr2	85534168	85550281
MAT2A_chr2_85534168_85550281	0/0	c0005	1205	1	0	0	1	0	0	copy fasta	MAT2A	chr2	85534168	85550281
MAT2A_chr2_85534168_85550281	0/0	c0006	1188	1	0	1	0	0	0	copy fasta	MAT2A	chr2	85534168	85550281
MAT2B_chr5_163500619_163524354	1/1	c0001	1005	345	89	65	134	14	41	copy fasta	MAT2B	chr5	163500619	163524354