JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAT2B_chr5_163500619_163524354	0/0	c0002	1005	18	3	9	3	0	3	copy fasta	MAT2B	chr5	163500619	163524354
MAT2B_chr5_163500619_163524354	0/0	c0003	1005	3	0	0	3	0	0	copy fasta	MAT2B	chr5	163500619	163524354
MAT2B_chr5_163500619_163524354	0/0	c0004	1005	1	1	0	0	0	0	copy fasta	MAT2B	chr5	163500619	163524354
MAT2B_chr5_163500619_163524354	0/0	c0005	988	1	0	1	0	0	0	copy fasta	MAT2B	chr5	163500619	163524354
MAT2B_chr5_163500619_163524354	0/0	c0006	1005	1	0	1	0	0	0	copy fasta	MAT2B	chr5	163500619	163524354
MAT2B_chr5_163500619_163524354	0/0	c0007	1005	1	1	0	0	0	0	copy fasta	MAT2B	chr5	163500619	163524354
MATCAP1_chr16_67170599_67188963	1/1	c0001	1416	203	50	48	70	11	22	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	c0002	1416	38	28	3	6	0	1	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	c0003	1416	35	0	4	31	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	c0004	1416	19	15	1	0	0	3	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	c0005	1416	11	3	1	0	1	6	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	c0006	1416	1	0	1	0	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	c0007	1416	1	0	0	1	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP2_chr7_36319152_36372240	1/1	c0001	1554	376	87	60	179	14	34	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	c0002	1554	6	0	6	0	0	0	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	c0003	1554	3	0	0	3	0	0	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	c0004	1554	1	1	0	0	0	0	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	c0005	1554	1	0	1	0	0	0	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	c0006	1554	1	0	1	0	0	0	copy fasta	MATCAP2	chr7	36319152	36372240
MATK_chr19_3772973_3791381	1/1	c0001	1524	406	91	74	181	13	45	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	0/0	c0002	1525	15	6	1	6	0	2	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	0/0	c0003	1524	4	0	0	4	0	0	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	0/0	c0004	1524	2	0	1	0	1	0	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	0/0	c0005	1524	1	0	0	1	0	0	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	0/0	c0006	1524	1	0	1	0	0	0	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	0/0	c0007	1524	1	0	0	0	0	1	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	0/0	c0008	1524	1	0	0	1	0	0	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	0/0	c0009	1524	1	0	1	0	0	0	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	0/0	c0010	1524	1	0	0	1	0	0	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	0/0	c0011	1524	1	1	0	0	0	0	copy fasta	MATK	chr19	3772973	3791381
MATN1_chr1_30706277_30728585	0/0	c0001	1491	167	54	20	85	1	7	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	c0002	1491	129	27	37	51	4	10	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	1/1	c0003	1491	126	9	20	56	9	30	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	c0004	1491	4	4	0	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	c0005	1491	3	0	0	3	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	c0006	1491	3	3	0	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	c0007	1491	2	0	0	2	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	c0008	1491	2	0	0	2	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	c0009	1491	1	1	0	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	c0010	1491	1	0	0	1	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	c0011	1491	1	0	0	0	0	1	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	c0012	1491	1	0	1	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN2_chr8_97864064_98041724	0/0	c0001	2871	35	0	6	22	1	6	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0002	2871	30	1	1	23	2	3	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0003	2871	25	1	1	21	0	2	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0004	2871	22	0	2	19	0	1	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0005	2871	19	0	5	11	2	1	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0006	2871	18	5	11	0	2	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0007	2871	10	0	4	4	1	1	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0008	2871	10	3	6	0	0	1	copy fasta	MATN2	chr8	97864064	98041724