JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MATN2_chr8_97864064_98041724	1/0	c0009	2871	9	0	1	7	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0010	2871	7	0	1	2	1	3	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/1	c0011	2871	7	3	1	0	2	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0012	2871	7	6	0	0	0	1	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0013	2871	5	0	0	5	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0014	2871	5	3	2	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0015	2871	5	5	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0016	2871	4	3	1	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0017	2871	4	3	1	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0018	2871	4	4	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0019	2871	4	0	2	0	1	1	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0020	2871	3	3	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0021	2871	3	3	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0022	2871	3	0	0	0	1	2	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0023	2871	2	2	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0024	2871	2	0	0	1	0	1	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0025	2871	2	2	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0026	2871	2	0	0	2	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0027	2871	2	0	0	2	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0028	2871	2	2	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0029	2871	2	2	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0030	2871	2	0	0	2	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0031	2871	2	2	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0032	2871	2	1	0	1	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0033	2871	2	1	0	0	0	1	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0034	2871	2	0	1	1	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0035	2871	2	2	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0036	2871	2	2	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0037	2871	2	0	0	0	2	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0038	2871	2	0	0	1	0	1	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0039	2871	2	0	0	0	1	1	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0040	2871	2	0	0	0	0	2	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0041	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0042	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0043	2871	1	0	1	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0044	2871	1	0	0	1	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0045	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0046	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0047	2871	1	0	0	1	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0048	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0049	2871	1	0	1	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0050	2871	1	0	0	1	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0051	2871	1	0	0	0	0	1	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0052	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0053	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0054	2871	1	0	1	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0055	2871	1	0	1	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0056	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0057	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0058	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724