JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MATN2_chr8_97864064_98041724	0/0	c0059	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0060	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0061	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0062	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0063	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0064	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0065	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0066	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0067	2871	1	0	0	0	0	1	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0068	2871	1	0	1	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0069	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0070	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0071	2871	1	0	0	1	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0072	2871	1	0	0	0	0	1	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0073	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0074	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0075	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0076	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0077	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0078	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0079	2871	1	0	0	0	0	1	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0080	2871	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0081	2871	1	0	0	1	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0082	2871	1	0	1	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	c0083	2871	1	0	0	1	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN3_chr2_19987052_20017668	0/0	c0001	1461	198	34	25	121	4	14	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	1/1	c0002	1461	158	43	33	55	6	19	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	c0003	1461	57	14	18	12	5	8	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	c0004	1461	5	2	1	1	0	1	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	c0005	1461	5	0	2	0	2	1	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	c0006	1461	2	0	0	2	0	0	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	c0007	1461	1	1	0	0	0	0	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	c0008	1461	1	0	1	0	0	0	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	c0009	1461	1	1	0	0	0	0	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	c0010	1461	1	0	0	0	0	1	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	c0011	1461	1	0	0	0	1	0	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	c0012	1461	1	1	0	0	0	0	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	c0013	1461	1	0	0	1	0	0	copy fasta	MATN3	chr2	19987052	20017668
MATN4_chr20_45288450_45313299	0/0	c0001	1746	172	8	22	115	8	19	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0002	1746	85	19	24	34	2	6	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	1/1	c0003	1746	60	12	10	23	4	9	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0004	1746	48	25	13	4	2	4	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0005	1746	16	14	2	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0006	1746	8	0	0	8	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0007	1746	5	4	1	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0008	1746	5	4	1	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0009	1746	3	2	1	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0010	1746	2	2	0	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0011	1746	2	2	0	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0012	1746	2	2	0	0	0	0	copy fasta	MATN4	chr20	45288450	45313299