JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MATN4_chr20_45288450_45313299	0/0	c0013	1746	1	0	1	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0014	1746	1	0	0	1	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0015	1746	1	1	0	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0016	1746	1	1	0	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0017	1746	1	0	1	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0018	1746	1	0	0	1	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0019	1746	1	0	0	1	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0020	1746	1	0	1	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0021	1746	1	1	0	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0022	1746	1	0	0	1	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0023	1746	1	0	1	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0024	1746	1	1	0	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0025	1746	1	0	1	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	c0026	1746	1	0	1	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATR3_chr5_139288740_139336677	1/1	c0001	2544	281	62	48	115	16	38	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	c0002	2544	1	0	0	1	0	0	copy fasta	MATR3	chr5	139288740	139336677
MAU2_chr19_19315829_19363754	1/0	c0001	1842	179	57	36	53	6	26	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/1	c0002	1842	152	33	25	68	7	18	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	c0003	1842	4	0	0	4	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	c0004	1842	2	0	2	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	c0005	1842	1	0	0	1	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	c0006	1842	1	1	0	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	c0007	1842	1	0	0	1	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	c0008	1842	1	1	0	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	c0009	1842	1	0	1	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	c0010	1827	1	0	0	0	1	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	c0011	1842	1	0	0	1	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAVS_chr20_3841834_3881118	1/1	c0001	1623	134	23	35	50	7	17	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0002	1623	96	1	13	70	3	9	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0003	1623	45	15	1	26	0	3	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0004	1623	36	11	6	6	2	11	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0005	1623	24	0	1	23	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0006	1623	21	0	3	14	1	3	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0007	1623	13	1	9	0	2	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0008	1623	8	7	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0009	1626	5	5	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0010	1623	5	5	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0011	1626	4	2	2	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0012	1623	4	3	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0013	1623	3	0	0	3	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0014	1623	2	1	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0015	1623	2	0	0	2	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0016	1623	2	2	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0017	1623	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0018	1623	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0019	1623	1	0	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0020	1623	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0021	1623	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0022	1637	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0023	1623	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118