JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAVS_chr20_3841834_3881118	0/0	c0024	1623	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0025	1623	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0026	1623	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0027	1623	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0028	1623	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0029	1623	1	0	0	0	1	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0030	1623	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0031	1623	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	c0032	1623	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAX_chr14_65070127_65107517	1/1	c0001	483	382	86	62	178	12	42	copy fasta	MAX	chr14	65070127	65107517
MAZ_chr16_29801529_29816164	1/1	c0001	1434	251	63	53	98	14	21	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	c0002	1434	8	8	0	0	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	c0003	1434	5	0	0	5	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	c0004	1425	5	0	0	1	0	4	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	c0005	1440	3	3	0	0	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	c0006	1419	2	0	0	0	0	2	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	c0007	1434	2	1	0	1	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	c0008	1434	1	1	0	0	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	c0009	1434	1	0	0	1	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	c0010	1434	1	0	0	1	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	c0011	1434	1	0	0	1	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	c0012	1434	1	0	1	0	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	c0013	1434	1	0	0	0	0	1	copy fasta	MAZ	chr16	29801529	29816164
MB21D2_chr3_192791815_192922856	1/1	c0001	1476	259	86	48	81	12	30	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	c0002	1476	31	1	4	26	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	c0003	1476	1	0	0	0	0	1	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	c0004	1476	1	0	0	1	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	c0005	1476	1	1	0	0	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	c0006	1476	1	0	0	1	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	c0007	1476	1	0	0	0	0	1	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	c0008	1476	1	1	0	0	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	c0009	1476	1	1	0	0	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	c0010	1476	1	0	0	1	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MBD1_chr18_50263846_50286523	1/1	c0001	1818	214	74	44	60	10	24	copy fasta	MBD1	chr18	50263846	50286523
MBD1_chr18_50263846_50286523	0/0	c0002	1818	105	3	20	71	1	10	copy fasta	MBD1	chr18	50263846	50286523
MBD1_chr18_50263846_50286523	0/0	c0003	1818	76	13	12	37	5	9	copy fasta	MBD1	chr18	50263846	50286523
MBD1_chr18_50263846_50286523	0/0	c0004	1818	1	0	1	0	0	0	copy fasta	MBD1	chr18	50263846	50286523
MBD1_chr18_50263846_50286523	0/0	c0005	1818	1	0	0	0	0	1	copy fasta	MBD1	chr18	50263846	50286523
MBD1_chr18_50263846_50286523	0/0	c0006	1818	1	0	0	1	0	0	copy fasta	MBD1	chr18	50263846	50286523
MBD1_chr18_50263846_50286523	0/0	c0007	1818	1	0	1	0	0	0	copy fasta	MBD1	chr18	50263846	50286523
MBD1_chr18_50263846_50286523	0/0	c0008	1818	1	0	0	1	0	0	copy fasta	MBD1	chr18	50263846	50286523
MBD1_chr18_50263846_50286523	0/0	c0009	1818	1	1	0	0	0	0	copy fasta	MBD1	chr18	50263846	50286523
MBD1_chr18_50263846_50286523	0/0	c0010	1818	1	1	0	0	0	0	copy fasta	MBD1	chr18	50263846	50286523
MBD2_chr18_54146606_54229669	1/1	c0001	1236	258	76	50	95	9	26	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	c0002	1239	25	3	7	7	4	4	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	c0003	1239	7	7	0	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	c0004	1236	4	0	0	4	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	c0005	1236	2	0	0	0	0	2	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	c0006	1236	2	0	1	0	0	1	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	c0007	1236	1	0	0	0	0	1	copy fasta	MBD2	chr18	54146606	54229669