JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MBD2_chr18_54146606_54229669	0/0	c0008	1257	1	0	0	0	1	0	copy fasta	MBD2	chr18	54146606	54229669
MBD3L1_chr19_8827377_8848319	0/1	c0001	585	361	78	75	158	12	37	copy fasta	MBD3L1	chr19	8827377	8848319
MBD3L1_chr19_8827377_8848319	1/0	c0002	585	41	10	6	19	0	5	copy fasta	MBD3L1	chr19	8827377	8848319
MBD3L1_chr19_8827377_8848319	0/0	c0003	585	12	0	0	11	0	1	copy fasta	MBD3L1	chr19	8827377	8848319
MBD3L1_chr19_8827377_8848319	0/0	c0004	585	8	5	1	1	0	1	copy fasta	MBD3L1	chr19	8827377	8848319
MBD3L1_chr19_8827377_8848319	0/0	c0005	585	4	4	0	0	0	0	copy fasta	MBD3L1	chr19	8827377	8848319
MBD3L1_chr19_8827377_8848319	0/0	c0006	597	1	0	0	1	0	0	copy fasta	MBD3L1	chr19	8827377	8848319
MBD3L1_chr19_8827377_8848319	0/0	c0007	585	1	1	0	0	0	0	copy fasta	MBD3L1	chr19	8827377	8848319
MBD3L2B_chr19_7013969_7026431	0/0	c0001	615	203	26	44	96	9	28	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	c0002	615	125	35	17	56	8	9	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	c0003	615	6	1	4	0	0	1	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	c0004	615	5	0	3	0	1	1	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	c0005	615	3	3	0	0	0	0	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	c0006	615	2	2	0	0	0	0	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	c0007	615	1	0	1	0	0	0	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	c0008	615	1	1	0	0	0	0	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	c0009	615	1	0	0	0	0	1	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	c0010	615	1	0	0	1	0	0	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	c0011	615	1	0	1	0	0	0	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	c0012	615	1	0	0	1	0	0	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2_chr19_7044321_7056735	0/1	c0001	627	141	15	33	63	2	27	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	1/0	c0002	627	71	15	9	37	2	7	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	c0003	627	24	0	6	15	1	2	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	c0004	627	5	4	1	0	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	c0005	627	3	0	0	3	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	c0006	627	3	3	0	0	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	c0007	627	2	2	0	0	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	c0008	627	2	0	2	0	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	c0009	627	1	1	0	0	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	c0010	627	1	0	0	1	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	c0011	627	1	1	0	0	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	c0012	627	1	0	0	0	1	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	c0013	627	1	0	0	1	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	c0014	627	1	1	0	0	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	c0015	627	1	0	1	0	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L3_chr19_7051207_7063676	0/0	c0000	0	3	0	0	2	1	0	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	c0001	627	121	8	26	67	2	18	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	c0002	627	83	30	8	33	4	8	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	c0003	627	32	4	12	6	2	8	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	c0004	627	32	0	8	17	4	3	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	c0005	627	7	0	3	4	0	0	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	c0006	627	2	0	1	0	1	0	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	c0007	627	2	0	0	2	0	0	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	c0008	627	1	0	0	1	0	0	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	c0009	627	1	0	0	1	0	0	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	c0010	627	1	0	0	1	0	0	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	c0011	627	1	0	0	1	0	0	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	c0012	627	1	0	0	0	0	1	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	c0013	627	1	0	0	1	0	0	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L4_chr19_7032749_7045179	0/0	c0000	0	2	1	1	0	0	0	copy fasta	MBD3L4	chr19	7032749	7045179