JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MBD3L4_chr19_7032749_7045179	0/0	c0001	627	106	14	28	41	6	17	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	c0002	627	71	12	7	38	1	13	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	c0003	627	37	3	12	16	4	2	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	c0004	627	10	2	1	5	0	2	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	c0005	627	5	0	1	4	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	c0006	627	5	5	0	0	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	c0007	627	4	0	0	2	0	2	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	c0008	627	3	2	1	0	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	c0009	627	3	0	1	1	1	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	c0010	627	2	2	0	0	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	c0011	627	2	0	0	2	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	c0012	627	2	0	2	0	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	c0013	627	2	0	0	2	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	c0014	627	1	1	0	0	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	c0015	627	1	1	0	0	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	c0016	627	1	1	0	0	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	c0017	627	1	0	1	0	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	c0018	627	1	0	1	0	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	c0019	627	1	0	0	1	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	c0020	627	1	0	0	1	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	c0021	665	1	0	0	1	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L5_chr19_7025578_7038011	0/0	c0001	627	90	13	20	39	3	15	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0002	627	74	16	9	40	1	8	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	1/0	c0003	627	32	1	10	15	4	1	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0004	627	11	2	3	5	0	1	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0005	627	6	0	0	5	0	1	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0006	627	6	4	2	0	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0007	627	4	3	1	0	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0008	627	3	0	2	1	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0009	627	3	0	0	1	0	2	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0010	627	3	0	0	3	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0011	627	2	2	0	0	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0012	627	2	0	0	1	1	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0013	627	2	2	0	0	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0014	627	2	0	0	2	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0015	627	1	0	0	1	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0016	18887	1	1	0	0	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0017	627	1	1	0	0	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0018	627	1	1	0	0	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0019	627	1	0	0	1	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0020	627	1	1	0	0	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0021	627	1	1	0	0	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0022	627	1	0	1	0	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	c0023	627	1	0	0	0	1	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3_chr19_1568596_1597865	1/1	c0001	876	395	85	85	168	16	39	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	c0002	876	3	3	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	c0003	876	1	0	1	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	c0004	876	1	0	0	0	0	1	copy fasta	MBD3	chr19	1568596	1597865
MBD4_chr3_129425947_129444948	1/0	c0001	1725	267	67	55	102	11	31	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	c0002	1725	73	2	12	55	0	4	copy fasta	MBD4	chr3	129425947	129444948