JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MBD4_chr3_129425947_129444948	0/1	c0003	1725	29	9	6	6	2	5	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	c0004	1725	21	11	2	3	0	5	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	c0005	1725	10	5	4	0	1	0	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	c0006	1725	1	0	0	0	0	1	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	c0007	1725	1	0	1	0	0	0	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	c0008	1725	1	0	0	1	0	0	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	c0009	1725	1	0	1	0	0	0	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	c0010	1725	1	1	0	0	0	0	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	c0011	1725	1	0	0	0	0	1	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	c0012	1725	1	0	0	1	0	0	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	c0013	1725	1	1	0	0	0	0	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	c0014	1725	1	0	1	0	0	0	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	c0015	1725	1	0	0	0	0	1	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	c0016	1725	1	0	0	1	0	0	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	c0017	1725	1	0	0	1	0	0	copy fasta	MBD4	chr3	129425947	129444948
MBD5_chr2_148016091_148521971	1/1	c0001	5184	172	65	32	46	8	19	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	c0002	5184	3	0	0	3	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	c0003	5184	3	3	0	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	c0004	5184	1	0	0	1	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	c0005	5184	1	1	0	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	c0006	5184	1	0	0	0	0	1	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	c0007	5184	1	0	0	1	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	c0008	5184	1	0	0	0	0	1	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	c0009	5184	1	0	0	0	0	1	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	c0010	5184	1	1	0	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	c0011	5174	1	0	0	1	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	c0012	5184	1	0	0	0	0	1	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	c0013	5184	1	0	0	0	0	1	copy fasta	MBD5	chr2	148016091	148521971
MBD6_chr12_57517824_57535148	1/1	c0001	3012	275	53	49	128	10	33	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	c0002	3012	31	27	4	0	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	c0003	3012	9	0	0	9	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	c0004	3012	5	0	0	5	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	c0005	3012	3	2	1	0	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	c0006	3012	3	3	0	0	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	c0007	3012	2	0	2	0	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	c0008	3012	2	0	0	2	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	c0009	3012	2	2	0	0	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	c0010	3012	1	0	1	0	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	c0011	3012	1	0	1	0	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	c0012	3012	1	0	0	1	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	c0013	3012	1	0	0	0	0	1	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	c0014	3012	1	0	0	0	0	1	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	c0015	3012	1	0	0	1	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	c0016	3012	1	0	0	0	0	1	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	c0017	3012	1	1	0	0	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBIP_chr14_36293564_36325637	0/1	c0001	1035	225	26	44	109	12	33	copy fasta	MBIP	chr14	36293564	36325637
MBIP_chr14_36293564_36325637	0/0	c0002	1035	51	47	4	0	0	0	copy fasta	MBIP	chr14	36293564	36325637
MBIP_chr14_36293564_36325637	1/0	c0003	1035	29	11	4	10	2	1	copy fasta	MBIP	chr14	36293564	36325637
MBIP_chr14_36293564_36325637	0/0	c0004	1035	5	4	1	0	0	0	copy fasta	MBIP	chr14	36293564	36325637
MBIP_chr14_36293564_36325637	0/0	c0005	1035	1	0	1	0	0	0	copy fasta	MBIP	chr14	36293564	36325637