JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MBIP_chr14_36293564_36325637	0/0	c0006	1035	1	0	0	1	0	0	copy fasta	MBIP	chr14	36293564	36325637
MBL2_chr10_52760380_52777784	0/1	c0001	747	223	46	36	104	9	27	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	1/0	c0002	747	104	23	12	58	1	9	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	c0003	747	61	0	23	34	0	4	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	c0004	747	17	17	0	0	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	c0005	747	12	9	2	0	0	1	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	c0006	747	5	0	2	0	1	2	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	c0007	747	4	0	3	0	1	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	c0008	747	2	1	1	0	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	c0009	747	2	0	0	0	0	2	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	c0010	747	1	1	0	0	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	c0011	747	1	0	1	0	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	c0012	304	1	1	0	0	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	c0013	747	1	0	0	0	0	1	copy fasta	MBL2	chr10	52760380	52777784
MBLAC1_chr7_100121967_100133495	1/1	c0001	801	351	76	63	159	11	40	copy fasta	MBLAC1	chr7	100121967	100133495
MBLAC1_chr7_100121967_100133495	0/0	c0002	801	18	2	4	8	1	3	copy fasta	MBLAC1	chr7	100121967	100133495
MBLAC1_chr7_100121967_100133495	0/0	c0003	801	10	9	1	0	0	0	copy fasta	MBLAC1	chr7	100121967	100133495
MBLAC1_chr7_100121967_100133495	0/0	c0004	801	5	4	0	0	0	1	copy fasta	MBLAC1	chr7	100121967	100133495
MBLAC1_chr7_100121967_100133495	0/0	c0005	801	2	0	2	0	0	0	copy fasta	MBLAC1	chr7	100121967	100133495
MBLAC1_chr7_100121967_100133495	0/0	c0006	801	1	0	0	0	1	0	copy fasta	MBLAC1	chr7	100121967	100133495
MBLAC1_chr7_100121967_100133495	0/0	c0007	801	1	0	0	1	0	0	copy fasta	MBLAC1	chr7	100121967	100133495
MBLAC1_chr7_100121967_100133495	0/0	c0008	801	1	1	0	0	0	0	copy fasta	MBLAC1	chr7	100121967	100133495
MBLAC1_chr7_100121967_100133495	0/0	c0009	801	1	0	0	0	1	0	copy fasta	MBLAC1	chr7	100121967	100133495
MBLAC2_chr5_90453209_90479771	0/1	c0001	840	331	67	55	154	11	43	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	c0002	840	16	7	7	0	1	1	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	c0003	840	13	12	1	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	1/0	c0004	840	8	0	0	7	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	c0005	840	4	4	0	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	c0006	840	1	0	0	1	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	c0007	840	1	0	0	1	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	c0008	840	1	0	0	1	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	c0009	840	1	1	0	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	c0010	840	1	1	0	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	c0011	840	1	0	1	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBNL1_chr3_152263929_152470780	1/1	c0001	1149	333	86	57	136	16	36	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	c0002	1149	3	0	3	0	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	c0003	1149	1	0	0	1	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	c0004	1149	1	0	0	1	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL2_chr13_97217333_97399120	1/1	c0001	1176	241	81	53	66	11	28	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	c0002	1176	9	6	0	3	0	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	c0003	1176	2	0	1	0	1	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	c0004	1176	1	0	0	1	0	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	c0005	1176	1	1	0	0	0	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL3_chrX_132364320_132494038	1/1	c0001	1065	190	56	30	75	9	18	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	c0002	1065	1	0	0	1	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBOAT1_chr6_20094684_20217469	1/1	c0001	1488	284	53	49	126	12	42	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	c0002	1488	20	17	3	0	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	c0003	1488	18	15	3	0	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	c0004	1488	5	4	1	0	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	c0005	1488	2	0	0	0	0	2	copy fasta	MBOAT1	chr6	20094684	20217469