JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKRD31_chr5_75063297_75241878	0/0	c0027	5790	1	1	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0028	5790	1	1	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0029	5790	1	0	0	1	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0030	5793	1	0	0	1	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0031	5793	1	0	0	1	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0032	5793	1	0	0	1	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0033	5790	1	1	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0034	5790	1	1	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0035	5790	1	1	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0036	5790	1	1	0	0	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD31_chr5_75063297_75241878	0/0	c0037	5790	1	0	0	1	0	0	copy fasta	ANKRD31	chr5	75063297	75241878
ANKRD33B_chr5_10559070_10662816	0/0	c0001	1485	141	34	29	57	6	15	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/1	c0002	1485	57	9	10	21	3	13	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0003	1485	27	0	3	21	0	3	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0004	1485	18	0	11	0	2	5	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0005	1485	15	0	8	3	1	3	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0006	1485	6	0	1	4	0	1	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0007	1485	6	0	0	6	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0008	1485	5	5	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0009	1485	4	3	1	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0010	1485	4	4	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	1/0	c0011	1485	3	2	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0012	1485	3	2	1	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0013	1485	3	3	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0014	1485	3	3	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0015	1485	3	3	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0016	1485	2	2	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0017	1485	2	2	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0018	1485	2	2	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0019	1485	2	2	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0020	1485	1	0	0	1	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0021	1485	1	1	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0022	1485	1	1	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0023	1485	1	1	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0024	1485	1	1	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0025	1485	1	1	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0026	1485	1	1	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0027	1485	1	1	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0028	1485	1	0	1	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0029	1485	1	1	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0030	1485	1	1	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0031	1485	1	1	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0032	1485	1	0	0	1	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0033	1485	1	0	1	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0034	1485	1	1	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0035	1485	1	1	0	0	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0036	1485	1	0	0	1	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33B_chr5_10559070_10662816	0/0	c0037	1485	1	0	0	1	0	0	copy fasta	ANKRD33B	chr5	10559070	10662816
ANKRD33_chr12_51883103_51896727	1/0	c0001	1359	239	76	41	86	13	22	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	c0002	1359	54	1	8	37	0	8	copy fasta	ANKRD33	chr12	51883103	51896727