JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MBTD1_chr17_51172425_51265049	1/1	c0001	1887	330	88	71	125	14	30	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	c0002	1887	8	4	2	2	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	c0003	1887	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	c0004	1887	1	0	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTPS1_chr16_84048763_84121942	0/0	c0001	3159	207	44	28	114	9	12	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	1/1	c0002	3159	109	27	24	32	3	21	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0003	3159	42	1	13	21	4	3	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0004	3159	38	13	5	18	0	2	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0005	3159	5	0	0	5	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0006	3159	4	0	0	3	0	1	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0007	3159	2	0	2	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0008	3159	2	2	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0009	3159	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0010	3159	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0011	3159	1	0	1	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0012	3159	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0013	3159	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0014	3159	1	0	0	0	0	1	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0015	3159	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0016	3159	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0017	3159	1	0	0	1	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0018	3159	1	0	1	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0019	3159	1	0	0	1	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0020	2617	1	0	0	1	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0021	3159	1	0	0	1	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0022	3159	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	c0023	3159	1	0	0	1	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS2_chrX_21834617_21890423	0/0	c0001	1560	177	41	29	91	4	12	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	1/1	c0002	1560	127	32	17	54	5	17	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	c0003	1560	1	1	0	0	0	0	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	c0004	1559	1	0	0	1	0	0	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	c0005	1560	1	0	0	0	0	1	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	c0006	1560	1	0	0	1	0	0	copy fasta	MBTPS2	chrX	21834617	21890423
MB_chr22_35601764_35622329	0/0	c0001	465	206	32	32	108	7	27	copy fasta	MB	chr22	35601764	35622329
MB_chr22_35601764_35622329	1/1	c0002	465	153	33	33	57	9	19	copy fasta	MB	chr22	35601764	35622329
MB_chr22_35601764_35622329	0/0	c0003	465	15	14	1	0	0	0	copy fasta	MB	chr22	35601764	35622329
MB_chr22_35601764_35622329	0/0	c0004	465	1	1	0	0	0	0	copy fasta	MB	chr22	35601764	35622329
MB_chr22_35601764_35622329	0/0	c0005	465	1	0	0	1	0	0	copy fasta	MB	chr22	35601764	35622329
MC1R_chr16_89913862_89925972	1/0	c0001	954	138	35	44	16	11	31	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0002	954	118	1	21	89	1	6	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0003	954	58	46	3	3	0	6	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0004	954	35	0	1	32	1	1	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0005	954	10	1	7	0	2	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0006	954	8	7	1	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/1	c0007	954	6	0	0	5	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0008	954	2	0	0	2	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0009	954	2	2	0	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0010	954	2	2	0	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0011	954	2	2	0	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0012	954	1	0	0	1	0	0	copy fasta	MC1R	chr16	89913862	89925972