JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MC1R_chr16_89913862_89925972	0/0	c0013	954	1	0	0	1	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0014	954	1	0	1	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0015	954	1	0	1	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0016	954	1	0	0	0	1	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0017	954	1	1	0	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0018	954	1	0	0	1	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0019	954	1	0	0	1	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0020	954	1	0	0	1	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0021	954	1	0	1	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0022	954	1	1	0	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0023	954	1	0	1	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0024	954	1	0	1	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0025	954	1	1	0	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	c0026	954	1	1	0	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC2R_chr18_13877044_13920536	1/1	c0001	894	403	83	70	186	16	46	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	c0002	894	7	5	2	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	c0003	894	3	3	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	c0004	894	1	0	0	1	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	c0005	894	1	0	0	1	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	c0006	894	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC3R_chr20_56243732_56254815	1/1	c0001	972	339	48	74	158	15	42	copy fasta	MC3R	chr20	56243732	56254815
MC3R_chr20_56243732_56254815	0/0	c0002	972	119	52	6	51	3	7	copy fasta	MC3R	chr20	56243732	56254815
MC3R_chr20_56243732_56254815	0/0	c0003	972	1	0	0	0	0	1	copy fasta	MC3R	chr20	56243732	56254815
MC3R_chr20_56243732_56254815	0/0	c0004	972	1	0	0	1	0	0	copy fasta	MC3R	chr20	56243732	56254815
MC4R_chr18_60366062_60377775	1/1	c0001	999	412	92	76	196	8	38	copy fasta	MC4R	chr18	60366062	60377775
MC4R_chr18_60366062_60377775	0/0	c0002	999	6	0	1	3	0	2	copy fasta	MC4R	chr18	60366062	60377775
MC4R_chr18_60366062_60377775	0/0	c0003	999	4	3	1	0	0	0	copy fasta	MC4R	chr18	60366062	60377775
MC4R_chr18_60366062_60377775	0/0	c0004	999	2	0	2	0	0	0	copy fasta	MC4R	chr18	60366062	60377775
MC4R_chr18_60366062_60377775	0/0	c0005	999	1	1	0	0	0	0	copy fasta	MC4R	chr18	60366062	60377775
MC4R_chr18_60366062_60377775	0/0	c0006	999	1	0	0	1	0	0	copy fasta	MC4R	chr18	60366062	60377775
MC4R_chr18_60366062_60377775	0/0	c0007	999	1	1	0	0	0	0	copy fasta	MC4R	chr18	60366062	60377775
MC4R_chr18_60366062_60377775	0/0	c0008	999	1	1	0	0	0	0	copy fasta	MC4R	chr18	60366062	60377775
MC5R_chr18_13819149_13832323	1/1	c0001	978	258	58	46	110	8	34	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	c0002	978	84	22	17	35	5	5	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	c0003	978	77	14	14	46	1	2	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	c0004	978	3	0	0	3	0	0	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	c0005	978	3	3	0	0	0	0	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	c0006	978	1	0	0	1	0	0	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	c0007	978	1	0	0	0	0	1	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	c0008	978	1	1	0	0	0	0	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	c0009	978	1	1	0	0	0	0	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	c0010	978	1	1	0	0	0	0	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	c0011	978	1	0	0	1	0	0	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	c0012	978	1	0	1	0	0	0	copy fasta	MC5R	chr18	13819149	13832323
MCAM_chr11_119303529_119322130	0/0	c0001	1941	304	56	49	145	13	41	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	1/1	c0002	1941	136	27	18	80	3	6	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	c0003	1941	5	0	3	0	2	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	c0004	1941	5	4	1	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	c0005	1941	4	0	3	0	0	1	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	c0006	1941	3	3	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130