JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MCAM_chr11_119303529_119322130	0/0	c0007	1941	3	1	2	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	c0008	1938	2	2	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	c0009	1941	2	0	2	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	c0010	1941	2	0	0	0	0	2	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	c0011	1941	2	0	0	2	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	c0012	1941	2	0	0	2	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	c0013	1941	2	2	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	c0014	1941	2	0	2	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	c0015	1941	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	c0016	1941	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	c0017	1938	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	c0018	1941	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	c0019	1941	1	0	1	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	c0020	1941	1	0	1	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	c0021	1941	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	c0022	1941	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAT_chr22_43127209_43148398	1/0	c0001	1173	211	58	45	79	4	24	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/1	c0002	1173	175	13	36	96	12	17	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	c0003	1173	9	9	0	0	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	c0004	1173	8	6	2	0	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	c0005	1173	4	3	1	0	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	c0006	1173	2	2	0	0	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	c0007	1173	2	0	0	0	2	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	c0008	1173	2	0	0	0	0	2	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	c0009	1173	1	1	0	0	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	c0010	1173	1	0	0	0	0	1	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	c0011	1173	1	0	0	1	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	c0012	1173	1	1	0	0	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	c0013	1173	1	1	0	0	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCCC1_chr3_183010218_183104496	0/0	c0001	2178	169	50	22	81	1	15	copy fasta	MCCC1	chr3	183010218	183104496
MCCC1_chr3_183010218_183104496	0/1	c0002	2178	136	15	38	59	6	17	copy fasta	MCCC1	chr3	183010218	183104496
MCCC1_chr3_183010218_183104496	1/0	c0003	2178	25	19	2	0	1	2	copy fasta	MCCC1	chr3	183010218	183104496
MCCC1_chr3_183010218_183104496	0/0	c0004	2178	2	2	0	0	0	0	copy fasta	MCCC1	chr3	183010218	183104496
MCCC1_chr3_183010218_183104496	0/0	c0005	2178	2	2	0	0	0	0	copy fasta	MCCC1	chr3	183010218	183104496
MCCC1_chr3_183010218_183104496	0/0	c0006	2178	2	0	0	2	0	0	copy fasta	MCCC1	chr3	183010218	183104496
MCCC1_chr3_183010218_183104496	0/0	c0007	2178	2	2	0	0	0	0	copy fasta	MCCC1	chr3	183010218	183104496
MCCC1_chr3_183010218_183104496	0/0	c0008	2178	1	1	0	0	0	0	copy fasta	MCCC1	chr3	183010218	183104496
MCCC1_chr3_183010218_183104496	0/0	c0009	2178	1	0	0	1	0	0	copy fasta	MCCC1	chr3	183010218	183104496
MCCC1_chr3_183010218_183104496	0/0	c0010	2178	1	1	0	0	0	0	copy fasta	MCCC1	chr3	183010218	183104496
MCCC1_chr3_183010218_183104496	0/0	c0011	2178	1	0	0	1	0	0	copy fasta	MCCC1	chr3	183010218	183104496
MCCC1_chr3_183010218_183104496	0/0	c0012	2178	1	0	0	1	0	0	copy fasta	MCCC1	chr3	183010218	183104496
MCCC1_chr3_183010218_183104496	0/0	c0013	2178	1	0	0	1	0	0	copy fasta	MCCC1	chr3	183010218	183104496
MCCC2_chr5_71582340_71663706	0/1	c0001	1692	296	58	48	148	6	35	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	1/0	c0002	1692	43	21	8	7	2	4	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	c0003	1692	3	2	1	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	c0004	1692	1	0	0	1	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	c0005	1692	1	0	1	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	c0006	1692	1	0	0	1	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	c0007	1692	1	0	1	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	c0008	1692	1	1	0	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706